miRNA display CGI


Results 41 - 60 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29003 5' -64.3 NC_006146.1 + 144755 0.74 0.230959
Target:  5'- aGcCCCCGugcucuuuccgaccGGGCCCCGGUGCCUUUCCa -3'
miRNA:   3'- cCaGGGGC--------------CCUGGGGUCGUGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 29024 0.76 0.160282
Target:  5'- aGG-CCCUGGu-CCCCAGCAgccucucCCCUCCCu -3'
miRNA:   3'- -CCaGGGGCCcuGGGGUCGU-------GGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 13434 0.8 0.083154
Target:  5'- gGGUCCCaggccagccggaGGGACCCCGGCAgCCCggguggCCCc -3'
miRNA:   3'- -CCAGGGg-----------CCCUGGGGUCGU-GGGa-----GGG- -5'
29003 5' -64.3 NC_006146.1 + 156072 0.74 0.227336
Target:  5'- cGG-CCCCGGG-CCCgAGaccguGCCCUCCUc -3'
miRNA:   3'- -CCaGGGGCCCuGGGgUCg----UGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 33667 0.9 0.01577
Target:  5'- uGGUCCCCGGGACCCCAgGCcCCCaCCCg -3'
miRNA:   3'- -CCAGGGGCCCUGGGGU-CGuGGGaGGG- -5'
29003 5' -64.3 NC_006146.1 + 34088 0.72 0.283824
Target:  5'- gGGUCCCgGGGGgcagccgcgaCCCAGCGCgC-CCCg -3'
miRNA:   3'- -CCAGGGgCCCUg---------GGGUCGUGgGaGGG- -5'
29003 5' -64.3 NC_006146.1 + 19590 0.8 0.083154
Target:  5'- gGGUCCCaggccagccggaGGGACCCCGGCAgCCCggguggCCCc -3'
miRNA:   3'- -CCAGGGg-----------CCCUGGGGUCGU-GGGa-----GGG- -5'
29003 5' -64.3 NC_006146.1 + 23067 0.72 0.281978
Target:  5'- gGGUCCaucaggccggccggaGGGACCCCGGCGgCCCggugugccagcgUCCCc -3'
miRNA:   3'- -CCAGGgg-------------CCCUGGGGUCGU-GGG------------AGGG- -5'
29003 5' -64.3 NC_006146.1 + 13834 0.72 0.281978
Target:  5'- gGGUCCaucaggccggccggaGGGACCCCGGCGgCCCggugugccagcgUCCCc -3'
miRNA:   3'- -CCAGGgg-------------CCCUGGGGUCGU-GGG------------AGGG- -5'
29003 5' -64.3 NC_006146.1 + 13720 0.73 0.259991
Target:  5'- gGGUCCaCCaggccggccggaGGGACCCCGGCAgCCCgggagagCCg -3'
miRNA:   3'- -CCAGG-GG------------CCCUGGGGUCGU-GGGa------GGg -5'
29003 5' -64.3 NC_006146.1 + 54645 0.73 0.259991
Target:  5'- uGGcUCCCCGGGcauuggagggGCCCCGucGUAgaCCUCCCa -3'
miRNA:   3'- -CC-AGGGGCCC----------UGGGGU--CGUg-GGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 42809 0.73 0.237817
Target:  5'- uGUCCCCu--GCCUCGGC-CCCUCCCg -3'
miRNA:   3'- cCAGGGGcccUGGGGUCGuGGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 168639 0.74 0.232527
Target:  5'- -uUCCCCGGGGCCCgAGCGCgCgUCg- -3'
miRNA:   3'- ccAGGGGCCCUGGGgUCGUG-GgAGgg -5'
29003 5' -64.3 NC_006146.1 + 164464 0.74 0.202836
Target:  5'- gGGcCCCauGGACCCCAGgGCCCacauggCCCu -3'
miRNA:   3'- -CCaGGGgcCCUGGGGUCgUGGGa-----GGG- -5'
29003 5' -64.3 NC_006146.1 + 169744 0.75 0.189261
Target:  5'- gGGgagCCCCGGGgcgGCCCgGGgACCCUCgCg -3'
miRNA:   3'- -CCa--GGGGCCC---UGGGgUCgUGGGAGgG- -5'
29003 5' -64.3 NC_006146.1 + 22758 0.75 0.184917
Target:  5'- cGUCCCgagaaGGGACCCgAGCAgCCCcgUCCCc -3'
miRNA:   3'- cCAGGGg----CCCUGGGgUCGU-GGG--AGGG- -5'
29003 5' -64.3 NC_006146.1 + 13524 0.75 0.184917
Target:  5'- cGUCCCgagaaGGGACCCgAGCAgCCCcgUCCCc -3'
miRNA:   3'- cCAGGGg----CCCUGGGgUCGU-GGG--AGGG- -5'
29003 5' -64.3 NC_006146.1 + 16713 0.76 0.160282
Target:  5'- aGG-CCCUGGu-CCCCAGCAgccucucCCCUCCCu -3'
miRNA:   3'- -CCaGGGGCCcuGGGGUCGU-------GGGAGGG- -5'
29003 5' -64.3 NC_006146.1 + 109057 0.77 0.129639
Target:  5'- --gCCCCGGGAgUCCCGGCACCagcCCCa -3'
miRNA:   3'- ccaGGGGCCCU-GGGGUCGUGGga-GGG- -5'
29003 5' -64.3 NC_006146.1 + 28824 0.8 0.083154
Target:  5'- gGGUCCCaggccagccggaGGGACCCCGGCAgCCCggguggCCCc -3'
miRNA:   3'- -CCAGGGg-----------CCCUGGGGUCGU-GGGa-----GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.