Results 1 - 20 of 431 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29003 | 5' | -64.3 | NC_006146.1 | + | 61883 | 0.66 | 0.57988 |
Target: 5'- gGGgcgcgCCCuCGGGuACCCCua-ACCUUCUCa -3' miRNA: 3'- -CCa----GGG-GCCC-UGGGGucgUGGGAGGG- -5' |
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29003 | 5' | -64.3 | NC_006146.1 | + | 8901 | 0.66 | 0.608201 |
Target: 5'- cGGUCuCCCaGGGugCCUAucCACCguggagccgguCUCCCa -3' miRNA: 3'- -CCAG-GGG-CCCugGGGUc-GUGG-----------GAGGG- -5' |
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29003 | 5' | -64.3 | NC_006146.1 | + | 3282 | 0.66 | 0.608201 |
Target: 5'- --nCCgCGGGACCCCc---CCCUCCg -3' miRNA: 3'- ccaGGgGCCCUGGGGucguGGGAGGg -5' |
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29003 | 5' | -64.3 | NC_006146.1 | + | 2350 | 0.66 | 0.608201 |
Target: 5'- --nCCgCGGGACCCCc---CCCUCCg -3' miRNA: 3'- ccaGGgGCCCUGGGGucguGGGAGGg -5' |
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29003 | 5' | -64.3 | NC_006146.1 | + | 1418 | 0.66 | 0.608201 |
Target: 5'- --nCCgCGGGACCCCc---CCCUCCg -3' miRNA: 3'- ccaGGgGCCCUGGGGucguGGGAGGg -5' |
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29003 | 5' | -64.3 | NC_006146.1 | + | 487 | 0.66 | 0.608201 |
Target: 5'- --nCCgCGGGACCCCc---CCCUCCg -3' miRNA: 3'- ccaGGgGCCCUGGGGucguGGGAGGg -5' |
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29003 | 5' | -64.3 | NC_006146.1 | + | 76105 | 0.66 | 0.607254 |
Target: 5'- --cCCCCGGG-CCUCGGCcuacguggacgugGCCCgcaacugggCCCu -3' miRNA: 3'- ccaGGGGCCCuGGGGUCG-------------UGGGa--------GGG- -5' |
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29003 | 5' | -64.3 | NC_006146.1 | + | 33177 | 0.66 | 0.598737 |
Target: 5'- -cUCCagaaCCGGGuagGCCCgGGCACCC-CCg -3' miRNA: 3'- ccAGG----GGCCC---UGGGgUCGUGGGaGGg -5' |
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29003 | 5' | -64.3 | NC_006146.1 | + | 62747 | 0.66 | 0.57988 |
Target: 5'- cGGagCCCCGcGGACCCaCAugaacGuCACCCUCa- -3' miRNA: 3'- -CCa-GGGGC-CCUGGG-GU-----C-GUGGGAGgg -5' |
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29003 | 5' | -64.3 | NC_006146.1 | + | 114081 | 0.66 | 0.608201 |
Target: 5'- aGGccgCCUCGGGGgCCagaAGC-CCCgCCCg -3' miRNA: 3'- -CCa--GGGGCCCUgGGg--UCGuGGGaGGG- -5' |
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29003 | 5' | -64.3 | NC_006146.1 | + | 73157 | 0.66 | 0.61768 |
Target: 5'- aGUgCaguaGGGugaggcGCCCCAGCA-CCUCCCg -3' miRNA: 3'- cCAgGgg--CCC------UGGGGUCGUgGGAGGG- -5' |
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29003 | 5' | -64.3 | NC_006146.1 | + | 15111 | 0.66 | 0.61768 |
Target: 5'- uGGcCCCCaGGGCCaCCgAGCGgCUCUUCUg -3' miRNA: 3'- -CCaGGGGcCCUGG-GG-UCGU-GGGAGGG- -5' |
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29003 | 5' | -64.3 | NC_006146.1 | + | 137663 | 0.66 | 0.627168 |
Target: 5'- cGG-CCCgGcGGACCcgCCGGCGgCCaCCCg -3' miRNA: 3'- -CCaGGGgC-CCUGG--GGUCGUgGGaGGG- -5' |
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29003 | 5' | -64.3 | NC_006146.1 | + | 121023 | 0.66 | 0.627168 |
Target: 5'- --aCCUgGaGGACCCCAGC---CUCCCg -3' miRNA: 3'- ccaGGGgC-CCUGGGGUCGuggGAGGG- -5' |
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29003 | 5' | -64.3 | NC_006146.1 | + | 84989 | 0.66 | 0.627168 |
Target: 5'- aGG-CCCCaGGGuaaaGCCCC-GCGgCUCUCUCa -3' miRNA: 3'- -CCaGGGG-CCC----UGGGGuCGU-GGGAGGG- -5' |
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29003 | 5' | -64.3 | NC_006146.1 | + | 11050 | 0.66 | 0.626219 |
Target: 5'- aGGUgUuuGGGuacgacgGCUaCAGCGCCCUCUCu -3' miRNA: 3'- -CCAgGggCCC-------UGGgGUCGUGGGAGGG- -5' |
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29003 | 5' | -64.3 | NC_006146.1 | + | 126534 | 0.66 | 0.61768 |
Target: 5'- --cCCCCGGGcgggGgUCUGGCACCUcgUCCCc -3' miRNA: 3'- ccaGGGGCCC----UgGGGUCGUGGG--AGGG- -5' |
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29003 | 5' | -64.3 | NC_006146.1 | + | 113519 | 0.66 | 0.61768 |
Target: 5'- cGGUCg-CGGGGCCagcccaCCGGCGCcaccgccgcagCCUCCCu -3' miRNA: 3'- -CCAGggGCCCUGG------GGUCGUG-----------GGAGGG- -5' |
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29003 | 5' | -64.3 | NC_006146.1 | + | 71868 | 0.66 | 0.61768 |
Target: 5'- cGGgCCCUggGGGGCCUCuacacGGCcgucacgcggACCCUCCUg -3' miRNA: 3'- -CCaGGGG--CCCUGGGG-----UCG----------UGGGAGGG- -5' |
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29003 | 5' | -64.3 | NC_006146.1 | + | 80734 | 0.66 | 0.61768 |
Target: 5'- -cUCCCCugccgcGGccucuACCUCGGCugCCUCCUg -3' miRNA: 3'- ccAGGGGc-----CC-----UGGGGUCGugGGAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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