miRNA display CGI


Results 1 - 20 of 175 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 3' -46.6 NC_006146.1 + 138037 0.66 0.999973
Target:  5'- ---cAGGGACCUcGcgccgcccgcuucauGGGggGGGAgGCCg -3'
miRNA:   3'- uauaUCUUUGGAuC---------------UCCuuCCCU-UGG- -5'
29004 3' -46.6 NC_006146.1 + 34207 0.66 0.999973
Target:  5'- ---cAGGGACCUcGcgccgcccgcuucauGGGggGGGAgGCCg -3'
miRNA:   3'- uauaUCUUUGGAuC---------------UCCuuCCCU-UGG- -5'
29004 3' -46.6 NC_006146.1 + 83764 0.66 0.99997
Target:  5'- -aGUGGGuGGCCUGGuGGGAGGucGCa -3'
miRNA:   3'- uaUAUCU-UUGGAUCuCCUUCCcuUGg -5'
29004 3' -46.6 NC_006146.1 + 141294 0.66 0.99997
Target:  5'- --uUGGggGCggCUGGGGGucGGGcuGGCCu -3'
miRNA:   3'- uauAUCuuUG--GAUCUCCuuCCC--UUGG- -5'
29004 3' -46.6 NC_006146.1 + 144372 0.66 0.99997
Target:  5'- --uUGGggGCggCUGGGGGucGGGcuGGCCu -3'
miRNA:   3'- uauAUCuuUG--GAUCUCCuuCCC--UUGG- -5'
29004 3' -46.6 NC_006146.1 + 147450 0.66 0.99997
Target:  5'- --uUGGggGCggCUGGGGGucGGGcuGGCCu -3'
miRNA:   3'- uauAUCuuUG--GAUCUCCuuCCC--UUGG- -5'
29004 3' -46.6 NC_006146.1 + 153606 0.66 0.99997
Target:  5'- --uUGGggGCggCUGGGGGucGGGcuGGCCu -3'
miRNA:   3'- uauAUCuuUG--GAUCUCCuuCCC--UUGG- -5'
29004 3' -46.6 NC_006146.1 + 150528 0.66 0.99997
Target:  5'- --uUGGggGCggCUGGGGGucGGGcuGGCCu -3'
miRNA:   3'- uauAUCuuUG--GAUCUCCuuCCC--UUGG- -5'
29004 3' -46.6 NC_006146.1 + 57314 0.66 0.999969
Target:  5'- uUGUGGA--CCUGGAcgcguggcucucuGGggGcGGGGCCc -3'
miRNA:   3'- uAUAUCUuuGGAUCU-------------CCuuC-CCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 115237 0.66 0.999945
Target:  5'- ---aGGGAGCCcagcugAGAGGcccAGGGAuucACCg -3'
miRNA:   3'- uauaUCUUUGGa-----UCUCCu--UCCCU---UGG- -5'
29004 3' -46.6 NC_006146.1 + 42994 0.66 0.999945
Target:  5'- -gGUAGAAuugccGCCgggugAGAGGugcGAGGGcuGCCg -3'
miRNA:   3'- uaUAUCUU-----UGGa----UCUCC---UUCCCu-UGG- -5'
29004 3' -46.6 NC_006146.1 + 67479 0.66 0.999945
Target:  5'- ----cGAAGCCccgguccaGGAGcGAGGGGAGCa -3'
miRNA:   3'- uauauCUUUGGa-------UCUC-CUUCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 39039 0.66 0.999945
Target:  5'- -cAUGGggGCC-AGcAGGcAGGGGcCCu -3'
miRNA:   3'- uaUAUCuuUGGaUC-UCCuUCCCUuGG- -5'
29004 3' -46.6 NC_006146.1 + 168476 0.66 0.99994
Target:  5'- ---cAGAuccGGCCUcacguccacggucgGGGGGccGGGGACCa -3'
miRNA:   3'- uauaUCU---UUGGA--------------UCUCCuuCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 124501 0.66 0.99994
Target:  5'- ---gGGAcucGGCCUGgucucggcccuggcGAGGGAcGGGGGCCu -3'
miRNA:   3'- uauaUCU---UUGGAU--------------CUCCUU-CCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 48006 0.66 0.999926
Target:  5'- gGUGgcgGGAGGCUUGGcgGGGGAGGcacggcGGGCCg -3'
miRNA:   3'- -UAUa--UCUUUGGAUC--UCCUUCC------CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 154474 0.66 0.999926
Target:  5'- gGUGUAGGagcgGACCUuaaAGGAguAGGGAAUa -3'
miRNA:   3'- -UAUAUCU----UUGGAuc-UCCU--UCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 96747 0.66 0.999926
Target:  5'- ---cAGAuuaacGGCCUGGAgaaGGAGcGGGAGCUc -3'
miRNA:   3'- uauaUCU-----UUGGAUCU---CCUU-CCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 46955 0.66 0.999926
Target:  5'- ---aAGAcgaagGACCUgccGGAGcuGAGGGGACCg -3'
miRNA:   3'- uauaUCU-----UUGGA---UCUCc-UUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 120679 0.66 0.999926
Target:  5'- -gAUGGA-----AGAGGAAGGGGuugACCa -3'
miRNA:   3'- uaUAUCUuuggaUCUCCUUCCCU---UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.