miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 3' -46.6 NC_006146.1 + 83764 0.66 0.99997
Target:  5'- -aGUGGGuGGCCUGGuGGGAGGucGCa -3'
miRNA:   3'- uaUAUCU-UUGGAUCuCCUUCCcuUGg -5'
29004 3' -46.6 NC_006146.1 + 26315 0.66 0.999902
Target:  5'- -cGUGGAAAUCaAGGuGGAgaAGGGGGCa -3'
miRNA:   3'- uaUAUCUUUGGaUCU-CCU--UCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 21403 0.66 0.9999
Target:  5'- cUAUGcGGACCUcagAGAGGGcaggguccccaugGGGGAGCUc -3'
miRNA:   3'- uAUAUcUUUGGA---UCUCCU-------------UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 33998 0.66 0.999902
Target:  5'- ---cGGugcACCUGGAaggcaGGggGGGggUCg -3'
miRNA:   3'- uauaUCuu-UGGAUCU-----CCuuCCCuuGG- -5'
29004 3' -46.6 NC_006146.1 + 54814 0.66 0.999902
Target:  5'- --uUGGAgagGACCcGGcGGAGGGcGGGCCa -3'
miRNA:   3'- uauAUCU---UUGGaUCuCCUUCC-CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 57739 0.66 0.999902
Target:  5'- -------cGCgaAGAGGGAGGGGGCUu -3'
miRNA:   3'- uauaucuuUGgaUCUCCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 40131 0.66 0.999902
Target:  5'- ---gGGAcACCgucuGGAGGGGGGCUg -3'
miRNA:   3'- uauaUCUuUGGaucuCCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 79695 0.66 0.999926
Target:  5'- ---cAGAGACCggccaacaggcAGGcGGggGGGAACa -3'
miRNA:   3'- uauaUCUUUGGa----------UCU-CCuuCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 96747 0.66 0.999926
Target:  5'- ---cAGAuuaacGGCCUGGAgaaGGAGcGGGAGCUc -3'
miRNA:   3'- uauaUCU-----UUGGAUCU---CCUU-CCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 111674 0.66 0.999924
Target:  5'- -cAUGGAGGCCaugucccUGGAGucguagguGGGGGAGCCc -3'
miRNA:   3'- uaUAUCUUUGG-------AUCUCc-------UUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 46955 0.66 0.999926
Target:  5'- ---aAGAcgaagGACCUgccGGAGcuGAGGGGACCg -3'
miRNA:   3'- uauaUCU-----UUGGA---UCUCc-UUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 14019 0.66 0.999926
Target:  5'- --cUGGAAGgC-GGAGGGcAGGGAGCa -3'
miRNA:   3'- uauAUCUUUgGaUCUCCU-UCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 153606 0.66 0.99997
Target:  5'- --uUGGggGCggCUGGGGGucGGGcuGGCCu -3'
miRNA:   3'- uauAUCuuUG--GAUCUCCuuCCC--UUGG- -5'
29004 3' -46.6 NC_006146.1 + 150528 0.66 0.99997
Target:  5'- --uUGGggGCggCUGGGGGucGGGcuGGCCu -3'
miRNA:   3'- uauAUCuuUG--GAUCUCCuuCCC--UUGG- -5'
29004 3' -46.6 NC_006146.1 + 147450 0.66 0.99997
Target:  5'- --uUGGggGCggCUGGGGGucGGGcuGGCCu -3'
miRNA:   3'- uauAUCuuUG--GAUCUCCuuCCC--UUGG- -5'
29004 3' -46.6 NC_006146.1 + 144372 0.66 0.99997
Target:  5'- --uUGGggGCggCUGGGGGucGGGcuGGCCu -3'
miRNA:   3'- uauAUCuuUG--GAUCUCCuuCCC--UUGG- -5'
29004 3' -46.6 NC_006146.1 + 141294 0.66 0.99997
Target:  5'- --uUGGggGCggCUGGGGGucGGGcuGGCCu -3'
miRNA:   3'- uauAUCuuUG--GAUCUCCuuCCC--UUGG- -5'
29004 3' -46.6 NC_006146.1 + 124501 0.66 0.99994
Target:  5'- ---gGGAcucGGCCUGgucucggcccuggcGAGGGAcGGGGGCCu -3'
miRNA:   3'- uauaUCU---UUGGAU--------------CUCCUU-CCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 168476 0.66 0.99994
Target:  5'- ---cAGAuccGGCCUcacguccacggucgGGGGGccGGGGACCa -3'
miRNA:   3'- uauaUCU---UUGGA--------------UCUCCuuCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 120679 0.66 0.999926
Target:  5'- -gAUGGA-----AGAGGAAGGGGuugACCa -3'
miRNA:   3'- uaUAUCUuuggaUCUCCUUCCCU---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.