miRNA display CGI


Results 41 - 60 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 3' -46.6 NC_006146.1 + 50744 0.67 0.999726
Target:  5'- ----cGggGCgUc-GGGAAGGGGGCCg -3'
miRNA:   3'- uauauCuuUGgAucUCCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 95564 0.67 0.999751
Target:  5'- -cAUGGAcACCUGGAcGGAgcuagauguuucuggGGcGGGGCCu -3'
miRNA:   3'- uaUAUCUuUGGAUCU-CCU---------------UC-CCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 59726 0.67 0.999751
Target:  5'- gGUGUAG--GCCggguccacguacacgUAGAGGGAGGaGGCCa -3'
miRNA:   3'- -UAUAUCuuUGG---------------AUCUCCUUCCcUUGG- -5'
29004 3' -46.6 NC_006146.1 + 150663 0.67 0.999726
Target:  5'- --cUGGGguGGCCggGGAGGGguGGGGAgugGCCa -3'
miRNA:   3'- uauAUCU--UUGGa-UCUCCU--UCCCU---UGG- -5'
29004 3' -46.6 NC_006146.1 + 128446 0.67 0.999834
Target:  5'- -----cAGACCgggcgggAGGGGGAGcGGGACCu -3'
miRNA:   3'- uauaucUUUGGa------UCUCCUUC-CCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 147585 0.67 0.999726
Target:  5'- --cUGGGguGGCCggGGAGGGguGGGGAgugGCCa -3'
miRNA:   3'- uauAUCU--UUGGa-UCUCCU--UCCCU---UGG- -5'
29004 3' -46.6 NC_006146.1 + 144507 0.67 0.999726
Target:  5'- --cUGGGguGGCCggGGAGGGguGGGGAgugGCCa -3'
miRNA:   3'- uauAUCU--UUGGa-UCUCCU--UCCCU---UGG- -5'
29004 3' -46.6 NC_006146.1 + 141429 0.67 0.999726
Target:  5'- --cUGGGguGGCCggGGAGGGguGGGGAgugGCCa -3'
miRNA:   3'- uauAUCU--UUGGa-UCUCCU--UCCCU---UGG- -5'
29004 3' -46.6 NC_006146.1 + 31749 0.67 0.999834
Target:  5'- ---cAGgcGCCcccccGGGGGAcGGGAGCCc -3'
miRNA:   3'- uauaUCuuUGGa----UCUCCUuCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 128098 0.67 0.999834
Target:  5'- ---gAGggGCC--GAGGcAGGGGACa -3'
miRNA:   3'- uauaUCuuUGGauCUCCuUCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 26278 0.67 0.999872
Target:  5'- ---cGGAAuuaGCCUGGGuGGAGGG-GCCg -3'
miRNA:   3'- uauaUCUU---UGGAUCUcCUUCCCuUGG- -5'
29004 3' -46.6 NC_006146.1 + 6108 0.67 0.999726
Target:  5'- -aAUGGAGGCaacggUGGAGGcgguGGGGAuCCa -3'
miRNA:   3'- uaUAUCUUUGg----AUCUCCu---UCCCUuGG- -5'
29004 3' -46.6 NC_006146.1 + 114971 0.68 0.999559
Target:  5'- ---aGGAGGCagAGAGGGcGGGGAACg -3'
miRNA:   3'- uauaUCUUUGgaUCUCCU-UCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 27 0.68 0.999559
Target:  5'- ---gAGggGCCgGGAuGGAuguuGGGGGACUu -3'
miRNA:   3'- uauaUCuuUGGaUCU-CCU----UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 168495 0.68 0.999651
Target:  5'- cGUGUGGAGGCCcgcggAGAGGccgugugugGAGGccGGGCCu -3'
miRNA:   3'- -UAUAUCUUUGGa----UCUCC---------UUCC--CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 166951 0.68 0.999559
Target:  5'- ---gGGAGugCUGcugcauGAGGAGGGGAAa- -3'
miRNA:   3'- uauaUCUUugGAU------CUCCUUCCCUUgg -5'
29004 3' -46.6 NC_006146.1 + 69241 0.68 0.999559
Target:  5'- --uUGGAcgauGACCUGGAGGAgcuggaggAGGuGGACg -3'
miRNA:   3'- uauAUCU----UUGGAUCUCCU--------UCC-CUUGg -5'
29004 3' -46.6 NC_006146.1 + 34597 0.68 0.999312
Target:  5'- aGUGgguGGAGCCUGGAGGuAGGuauCCa -3'
miRNA:   3'- -UAUau-CUUUGGAUCUCCuUCCcuuGG- -5'
29004 3' -46.6 NC_006146.1 + 170358 0.68 0.999651
Target:  5'- cGUGUGGAGGCCcgcggAGAGGccgugugugGAGGccGGGCCu -3'
miRNA:   3'- -UAUAUCUUUGGa----UCUCC---------UUCC--CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 169427 0.68 0.999651
Target:  5'- cGUGUGGAGGCCcgcggAGAGGccgugugugGAGGccGGGCCu -3'
miRNA:   3'- -UAUAUCUUUGGa----UCUCC---------UUCC--CUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.