miRNA display CGI


Results 61 - 80 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 3' -46.6 NC_006146.1 + 167563 0.68 0.999651
Target:  5'- cGUGUGGAGGCCcgcggAGAGGccgugugugGAGGccGGGCCu -3'
miRNA:   3'- -UAUAUCUUUGGa----UCUCC---------UUCC--CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 21580 0.68 0.999148
Target:  5'- -cGUGG-AGCCUaaggGGGGGAucaAGGGGGCa -3'
miRNA:   3'- uaUAUCuUUGGA----UCUCCU---UCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 60474 0.68 0.999312
Target:  5'- ---gGGGAGCggugAGAGGccGGGGGGCCa -3'
miRNA:   3'- uauaUCUUUGga--UCUCCu-UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 76904 0.68 0.999312
Target:  5'- -cGUGGGAGCC-AGAGGugaccgcGGGGcugcAGCCg -3'
miRNA:   3'- uaUAUCUUUGGaUCUCCu------UCCC----UUGG- -5'
29004 3' -46.6 NC_006146.1 + 4860 0.68 0.999559
Target:  5'- -aAUAGggGCa---GGGgcGGGGGCCa -3'
miRNA:   3'- uaUAUCuuUGgaucUCCuuCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 77761 0.68 0.999651
Target:  5'- uUGUAGGGuuuguugcCCUGGAucGGAGGGGugguAACCa -3'
miRNA:   3'- uAUAUCUUu-------GGAUCU--CCUUCCC----UUGG- -5'
29004 3' -46.6 NC_006146.1 + 69241 0.68 0.999559
Target:  5'- --uUGGAcgauGACCUGGAGGAgcuggaggAGGuGGACg -3'
miRNA:   3'- uauAUCU----UUGGAUCUCCU--------UCC-CUUGg -5'
29004 3' -46.6 NC_006146.1 + 40320 0.68 0.999651
Target:  5'- -aGUAG--GCC-GGAGGAGGGuAGCCg -3'
miRNA:   3'- uaUAUCuuUGGaUCUCCUUCCcUUGG- -5'
29004 3' -46.6 NC_006146.1 + 39570 0.68 0.999643
Target:  5'- ---cAGGAuCCUGGAGGGcaugaagAGGGAcuccaGCCc -3'
miRNA:   3'- uauaUCUUuGGAUCUCCU-------UCCCU-----UGG- -5'
29004 3' -46.6 NC_006146.1 + 138429 0.69 0.998719
Target:  5'- aGUGgguGGAGCCUAGAGGuAGGuuuCCa -3'
miRNA:   3'- -UAUau-CUUUGGAUCUCCuUCCcuuGG- -5'
29004 3' -46.6 NC_006146.1 + 125708 0.69 0.998909
Target:  5'- ---gGGAGACggaggaagauGAGGAGGGGAGCg -3'
miRNA:   3'- uauaUCUUUGgau-------CUCCUUCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 145328 0.69 0.998719
Target:  5'- ----uGAAAUUgGGAGGAaugaucacgGGGGAGCCa -3'
miRNA:   3'- uauauCUUUGGaUCUCCU---------UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 70712 0.69 0.998719
Target:  5'- ---cGGGAGCUcaGGAGGAgcGGGGGGCUu -3'
miRNA:   3'- uauaUCUUUGGa-UCUCCU--UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 65199 0.69 0.998443
Target:  5'- --cUAGgcGCuCUGGGGGcccuGGGAGCCc -3'
miRNA:   3'- uauAUCuuUG-GAUCUCCuu--CCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 48581 0.69 0.998443
Target:  5'- ----cGggGCCUcGGGGGucAGGGAgGCCa -3'
miRNA:   3'- uauauCuuUGGAuCUCCU--UCCCU-UGG- -5'
29004 3' -46.6 NC_006146.1 + 68590 0.69 0.998694
Target:  5'- aGUAUGGAGACUgcucAgcugauggcaguuGAGGAAGGGAggGCUg -3'
miRNA:   3'- -UAUAUCUUUGGa---U-------------CUCCUUCCCU--UGG- -5'
29004 3' -46.6 NC_006146.1 + 140527 0.69 0.998443
Target:  5'- ---cAGcAAACCUAGcccuGGGAGGGAcggcACCc -3'
miRNA:   3'- uauaUC-UUUGGAUCu---CCUUCCCU----UGG- -5'
29004 3' -46.6 NC_006146.1 + 140870 0.69 0.998119
Target:  5'- -aGUGGAAGCC--GAGGGAGGuGGCUc -3'
miRNA:   3'- uaUAUCUUUGGauCUCCUUCCcUUGG- -5'
29004 3' -46.6 NC_006146.1 + 71251 0.69 0.998443
Target:  5'- ----uGggGCCUGGcGGggGGcGGCCu -3'
miRNA:   3'- uauauCuuUGGAUCuCCuuCCcUUGG- -5'
29004 3' -46.6 NC_006146.1 + 116746 0.69 0.998119
Target:  5'- ---aGGAgGACgaGGAGGAgggcaGGGGGGCCg -3'
miRNA:   3'- uauaUCU-UUGgaUCUCCU-----UCCCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.