miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 3' -46.6 NC_006146.1 + 34854 1.1 0.020647
Target:  5'- uAUAUAGAAACCUAGAGGAAGGGAACCc -3'
miRNA:   3'- -UAUAUCUUUGGAUCUCCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 138684 0.95 0.16695
Target:  5'- uAUAUAGGAACCUAGAGaAAGGGAACCc -3'
miRNA:   3'- -UAUAUCUUUGGAUCUCcUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 97846 0.81 0.695187
Target:  5'- ------cGACCUGGAGGAGGGGGccGCCg -3'
miRNA:   3'- uauaucuUUGGAUCUCCUUCCCU--UGG- -5'
29004 3' -46.6 NC_006146.1 + 137234 0.8 0.768419
Target:  5'- -gGUGGggGCCUGGGGucccGGGGACCa -3'
miRNA:   3'- uaUAUCuuUGGAUCUCcuu-CCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 137047 0.8 0.768419
Target:  5'- -gGUGGggGCCUGGGGuuccGGGGACCa -3'
miRNA:   3'- uaUAUCuuUGGAUCUCcuu-CCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 157208 0.79 0.797951
Target:  5'- ---gAGAGGCCgaaagcGGGGGggGGGGACUg -3'
miRNA:   3'- uauaUCUUUGGa-----UCUCCuuCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 154130 0.79 0.797951
Target:  5'- ---gAGAGGCCgaaagcGGGGGggGGGGACUg -3'
miRNA:   3'- uauaUCUUUGGa-----UCUCCuuCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 144896 0.79 0.797951
Target:  5'- ---gAGAGGCCgaaagcGGGGGggGGGGACUg -3'
miRNA:   3'- uauaUCUUUGGa-----UCUCCuuCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 141818 0.79 0.797951
Target:  5'- ---gAGAGGCCgaaagcGGGGGggGGGGACUg -3'
miRNA:   3'- uauaUCUUUGGa-----UCUCCuuCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 147974 0.79 0.797951
Target:  5'- ---gAGAGGCCgaaagcGGGGGggGGGGACUg -3'
miRNA:   3'- uauaUCUUUGGa-----UCUCCuuCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 151052 0.79 0.797951
Target:  5'- ---gAGAGGCCgaaagcGGGGGggGGGGACUg -3'
miRNA:   3'- uauaUCUUUGGa-----UCUCCuuCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 18232 0.79 0.820484
Target:  5'- uUGUGGAcGGCCUGGGGGAgcucauggacagccuGGGGAGCg -3'
miRNA:   3'- uAUAUCU-UUGGAUCUCCU---------------UCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 162034 0.77 0.868469
Target:  5'- --cUGGGAGCCUGGGGGcGGGGGcagGCUg -3'
miRNA:   3'- uauAUCUUUGGAUCUCCuUCCCU---UGG- -5'
29004 3' -46.6 NC_006146.1 + 167609 0.76 0.910839
Target:  5'- --cUGGggGCCUcgggggcGGAGGggGGGGuCCc -3'
miRNA:   3'- uauAUCuuUGGA-------UCUCCuuCCCUuGG- -5'
29004 3' -46.6 NC_006146.1 + 169473 0.76 0.910839
Target:  5'- --cUGGggGCCUcgggggcGGAGGggGGGGuCCc -3'
miRNA:   3'- uauAUCuuUGGA-------UCUCCuuCCCUuGG- -5'
29004 3' -46.6 NC_006146.1 + 170404 0.76 0.910839
Target:  5'- --cUGGggGCCUcgggggcGGAGGggGGGGuCCc -3'
miRNA:   3'- uauAUCuuUGGA-------UCUCCuuCCCUuGG- -5'
29004 3' -46.6 NC_006146.1 + 168541 0.76 0.910839
Target:  5'- --cUGGggGCCUcgggggcGGAGGggGGGGuCCc -3'
miRNA:   3'- uauAUCuuUGGA-------UCUCCuuCCCUuGG- -5'
29004 3' -46.6 NC_006146.1 + 8254 0.76 0.917722
Target:  5'- cUGUGGAGAgUagggAGGGGGAGGGAGCg -3'
miRNA:   3'- uAUAUCUUUgGa---UCUCCUUCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 41062 0.75 0.929392
Target:  5'- --cUGGggGCCUcGGGGuGGAGGGAgGCCa -3'
miRNA:   3'- uauAUCuuUGGA-UCUC-CUUCCCU-UGG- -5'
29004 3' -46.6 NC_006146.1 + 51571 0.74 0.953824
Target:  5'- --cUGGgcGCCgccgGGAGGGgcccgGGGGAGCCa -3'
miRNA:   3'- uauAUCuuUGGa---UCUCCU-----UCCCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.