miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 3' -46.6 NC_006146.1 + 14857 0.74 0.953824
Target:  5'- ---gGGAGGCCgAGGGGGcagccAGGGAGCUg -3'
miRNA:   3'- uauaUCUUUGGaUCUCCU-----UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 168587 0.73 0.971788
Target:  5'- aAUGUGGuugauGGCCUGGAacugucGGAAGGaGGGCCu -3'
miRNA:   3'- -UAUAUCu----UUGGAUCU------CCUUCC-CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 7913 0.73 0.971788
Target:  5'- ---aGGAGGCC--GAGGAgaaGGGGGACCc -3'
miRNA:   3'- uauaUCUUUGGauCUCCU---UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 60138 0.73 0.971788
Target:  5'- ---gAGGGACCUGGuGGggGGuGuguGCCa -3'
miRNA:   3'- uauaUCUUUGGAUCuCCuuCC-Cu--UGG- -5'
29004 3' -46.6 NC_006146.1 + 33210 0.73 0.974667
Target:  5'- ---gGGAGGCC-GGAGG--GGGAGCCg -3'
miRNA:   3'- uauaUCUUUGGaUCUCCuuCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 124585 0.73 0.974667
Target:  5'- ---cAGAAGCCcggccgAGAGGAAGaGGGGCUc -3'
miRNA:   3'- uauaUCUUUGGa-----UCUCCUUC-CCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 45075 0.73 0.977069
Target:  5'- ---gAGguGCCUcguggggAGAGGGAGGGuGCCg -3'
miRNA:   3'- uauaUCuuUGGA-------UCUCCUUCCCuUGG- -5'
29004 3' -46.6 NC_006146.1 + 15293 0.72 0.982019
Target:  5'- ----cGGAGCgaGGGGGAGGaGGGGCCg -3'
miRNA:   3'- uauauCUUUGgaUCUCCUUC-CCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 90172 0.72 0.982019
Target:  5'- -gGUAGAGGCCgcggcAGGGGAgguagugcAGGGGGCa -3'
miRNA:   3'- uaUAUCUUUGGa----UCUCCU--------UCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 158565 0.72 0.984072
Target:  5'- ----uGAGGCCcAGGGGcGAGGGGACUg -3'
miRNA:   3'- uauauCUUUGGaUCUCC-UUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 143134 0.72 0.984072
Target:  5'- cUGUAGcccguGACuCUGGAGGAcGGGGACg -3'
miRNA:   3'- uAUAUCu----UUG-GAUCUCCUuCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 146212 0.72 0.984072
Target:  5'- cUGUAGcccguGACuCUGGAGGAcGGGGACg -3'
miRNA:   3'- uAUAUCu----UUG-GAUCUCCUuCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 152368 0.72 0.984072
Target:  5'- cUGUAGcccguGACuCUGGAGGAcGGGGACg -3'
miRNA:   3'- uAUAUCu----UUG-GAUCUCCUuCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 155446 0.72 0.984072
Target:  5'- cUGUAGcccguGACuCUGGAGGAcGGGGACg -3'
miRNA:   3'- uAUAUCu----UUG-GAUCUCCUuCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 158525 0.72 0.984072
Target:  5'- cUGUAGcccguGACuCUGGAGGAcGGGGACg -3'
miRNA:   3'- uAUAUCu----UUG-GAUCUCCUuCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 109849 0.72 0.984072
Target:  5'- -gGUGGuguGCCaUAGAgGGGAGGGAgACCg -3'
miRNA:   3'- uaUAUCuu-UGG-AUCU-CCUUCCCU-UGG- -5'
29004 3' -46.6 NC_006146.1 + 146252 0.72 0.984072
Target:  5'- ----uGAGGCCcAGGGGcGAGGGGACUg -3'
miRNA:   3'- uauauCUUUGGaUCUCC-UUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 149330 0.72 0.984072
Target:  5'- ----uGAGGCCcAGGGGcGAGGGGACUg -3'
miRNA:   3'- uauauCUUUGGaUCUCC-UUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 152408 0.72 0.984072
Target:  5'- ----uGAGGCCcAGGGGcGAGGGGACUg -3'
miRNA:   3'- uauauCUUUGGaUCUCC-UUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 155486 0.72 0.984072
Target:  5'- ----uGAGGCCcAGGGGcGAGGGGACUg -3'
miRNA:   3'- uauauCUUUGGaUCUCC-UUCCCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.