miRNA display CGI


Results 41 - 60 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 3' -46.6 NC_006146.1 + 146212 0.72 0.984072
Target:  5'- cUGUAGcccguGACuCUGGAGGAcGGGGACg -3'
miRNA:   3'- uAUAUCu----UUG-GAUCUCCUuCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 155446 0.72 0.984072
Target:  5'- cUGUAGcccguGACuCUGGAGGAcGGGGACg -3'
miRNA:   3'- uAUAUCu----UUG-GAUCUCCUuCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 89390 0.72 0.985763
Target:  5'- -gGUGGgcACCgAGGGGAGcacaaagacggauGGGAGCCg -3'
miRNA:   3'- uaUAUCuuUGGaUCUCCUU-------------CCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 42285 0.72 0.987639
Target:  5'- -gGUGGugGCggGGAGGAGgagcGGGAGCCg -3'
miRNA:   3'- uaUAUCuuUGgaUCUCCUU----CCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 90280 0.72 0.988578
Target:  5'- -gGUAGAGGCCguggucgaggacGAGGAAGGGGcagaggggagggGCCu -3'
miRNA:   3'- uaUAUCUUUGGau----------CUCCUUCCCU------------UGG- -5'
29004 3' -46.6 NC_006146.1 + 137396 0.72 0.988879
Target:  5'- ---gGGAGGCCgGGAGGGugcuggggucccGGGGACCa -3'
miRNA:   3'- uauaUCUUUGGaUCUCCUu-----------CCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 115047 0.72 0.989173
Target:  5'- -aGUAGGAGgaggAGGGGAAGGGGGCg -3'
miRNA:   3'- uaUAUCUUUgga-UCUCCUUCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 145288 0.71 0.990423
Target:  5'- ---cGGAGACCaGGAGGAcgccuggAGGcGGACCc -3'
miRNA:   3'- uauaUCUUUGGaUCUCCU-------UCC-CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 154522 0.71 0.990423
Target:  5'- ---cGGAGACCaGGAGGAcgccuggAGGcGGACCc -3'
miRNA:   3'- uauaUCUUUGGaUCUCCU-------UCC-CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 157600 0.71 0.990423
Target:  5'- ---cGGAGACCaGGAGGAcgccuggAGGcGGACCc -3'
miRNA:   3'- uauaUCUUUGGaUCUCCU-------UCC-CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 151444 0.71 0.990423
Target:  5'- ---cGGAGACCaGGAGGAcgccuggAGGcGGACCc -3'
miRNA:   3'- uauaUCUUUGGaUCUCCU-------UCC-CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 142210 0.71 0.990423
Target:  5'- ---cGGAGACCaGGAGGAcgccuggAGGcGGACCc -3'
miRNA:   3'- uauaUCUUUGGaUCUCCU-------UCC-CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 148366 0.71 0.990423
Target:  5'- ---cGGAGACCaGGAGGAcgccuggAGGcGGACCc -3'
miRNA:   3'- uauaUCUUUGGaUCUCCU-------UCC-CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 166861 0.71 0.990555
Target:  5'- ---aGGAAGCCcggcgGGAGGG-GGGAGCg -3'
miRNA:   3'- uauaUCUUUGGa----UCUCCUuCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 90066 0.71 0.990555
Target:  5'- ---aGGGAGCCUAgGAGGcggugcagGGGGGAGCa -3'
miRNA:   3'- uauaUCUUUGGAU-CUCC--------UUCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 5204 0.71 0.991794
Target:  5'- -----uGGGCCUGGGGGAgcuAGGGGugCa -3'
miRNA:   3'- uauaucUUUGGAUCUCCU---UCCCUugG- -5'
29004 3' -46.6 NC_006146.1 + 170080 0.71 0.992796
Target:  5'- -cGUGGGgauGGCCggcgGGAGGGgccggcgccgcagGGGGGGCCg -3'
miRNA:   3'- uaUAUCU---UUGGa---UCUCCU-------------UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 16059 0.71 0.992901
Target:  5'- ---gAGAGucgGCCUAGGcccggggaguGGAGGGGGAUCg -3'
miRNA:   3'- uauaUCUU---UGGAUCU----------CCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 12981 0.71 0.992901
Target:  5'- ---gAGAGucgGCCUAGGcccggggaguGGAGGGGGAUCg -3'
miRNA:   3'- uauaUCUU---UGGAUCU----------CCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 19137 0.71 0.992901
Target:  5'- ---gAGAGucgGCCUAGGcccggggaguGGAGGGGGAUCg -3'
miRNA:   3'- uauaUCUU---UGGAUCU----------CCUUCCCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.