miRNA display CGI


Results 61 - 80 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 3' -46.6 NC_006146.1 + 19137 0.71 0.992901
Target:  5'- ---gAGAGucgGCCUAGGcccggggaguGGAGGGGGAUCg -3'
miRNA:   3'- uauaUCUU---UGGAUCU----------CCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 16059 0.71 0.992901
Target:  5'- ---gAGAGucgGCCUAGGcccggggaguGGAGGGGGAUCg -3'
miRNA:   3'- uauaUCUU---UGGAUCU----------CCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 12981 0.71 0.992901
Target:  5'- ---gAGAGucgGCCUAGGcccggggaguGGAGGGGGAUCg -3'
miRNA:   3'- uauaUCUU---UGGAUCU----------CCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 167284 0.71 0.993602
Target:  5'- -cGUGGGgauGGCCggcgGGAGGGgccggcgccugcagGGGGGGCCg -3'
miRNA:   3'- uaUAUCU---UUGGa---UCUCCU--------------UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 169148 0.71 0.993602
Target:  5'- -cGUGGGgauGGCCggcgGGAGGGgccggcgccugcagGGGGGGCCg -3'
miRNA:   3'- uaUAUCU---UUGGa---UCUCCU--------------UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 168216 0.71 0.993602
Target:  5'- -cGUGGGgauGGCCggcgGGAGGGgccggcgccugcagGGGGGGCCg -3'
miRNA:   3'- uaUAUCU---UUGGa---UCUCCU--------------UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 166136 0.71 0.993885
Target:  5'- ---aGGAGACggAGGGGGAGGGAcUCu -3'
miRNA:   3'- uauaUCUUUGgaUCUCCUUCCCUuGG- -5'
29004 3' -46.6 NC_006146.1 + 57045 0.71 0.994757
Target:  5'- ----cGAAGCCgccaggguugAGGcGGGAGGGGGCCu -3'
miRNA:   3'- uauauCUUUGGa---------UCU-CCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 31684 0.71 0.994757
Target:  5'- ---cAGGGACCagGGaAGGGuGGGGGACCg -3'
miRNA:   3'- uauaUCUUUGGa-UC-UCCU-UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 101691 0.71 0.994757
Target:  5'- ---gGGcgGCgCUAGAGGggGGGAGa- -3'
miRNA:   3'- uauaUCuuUG-GAUCUCCuuCCCUUgg -5'
29004 3' -46.6 NC_006146.1 + 30906 0.71 0.994757
Target:  5'- -gAUAGGAACCcacuUGGuGGcccagGGGGGAGCCc -3'
miRNA:   3'- uaUAUCUUUGG----AUCuCC-----UUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 20912 0.7 0.995525
Target:  5'- ---cAGu--UCUAG-GGAGGGGGACCa -3'
miRNA:   3'- uauaUCuuuGGAUCuCCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 17834 0.7 0.995525
Target:  5'- ---cAGu--UCUAG-GGAGGGGGACCa -3'
miRNA:   3'- uauaUCuuuGGAUCuCCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 27067 0.7 0.995525
Target:  5'- ---cAGu--UCUAG-GGAGGGGGACCa -3'
miRNA:   3'- uauaUCuuuGGAUCuCCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 14756 0.7 0.995525
Target:  5'- ---cAGu--UCUAG-GGAGGGGGACCa -3'
miRNA:   3'- uauaUCuuuGGAUCuCCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 23989 0.7 0.995525
Target:  5'- ---cAGu--UCUAG-GGAGGGGGACCa -3'
miRNA:   3'- uauaUCuuuGGAUCuCCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 144800 0.7 0.996199
Target:  5'- ---gGGggGCCggggagGGAGGcGGGGAggacagGCCa -3'
miRNA:   3'- uauaUCuuUGGa-----UCUCCuUCCCU------UGG- -5'
29004 3' -46.6 NC_006146.1 + 141722 0.7 0.996199
Target:  5'- ---gGGggGCCggggagGGAGGcGGGGAggacagGCCa -3'
miRNA:   3'- uauaUCuuUGGa-----UCUCCuUCCCU------UGG- -5'
29004 3' -46.6 NC_006146.1 + 150956 0.7 0.996199
Target:  5'- ---gGGggGCCggggagGGAGGcGGGGAggacagGCCa -3'
miRNA:   3'- uauaUCuuUGGa-----UCUCCuUCCCU------UGG- -5'
29004 3' -46.6 NC_006146.1 + 147878 0.7 0.996199
Target:  5'- ---gGGggGCCggggagGGAGGcGGGGAggacagGCCa -3'
miRNA:   3'- uauaUCuuUGGa-----UCUCCuUCCCU------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.