miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 3' -46.6 NC_006146.1 + 154474 0.66 0.999926
Target:  5'- gGUGUAGGagcgGACCUuaaAGGAguAGGGAAUa -3'
miRNA:   3'- -UAUAUCU----UUGGAuc-UCCU--UCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 14019 0.66 0.999926
Target:  5'- --cUGGAAGgC-GGAGGGcAGGGAGCa -3'
miRNA:   3'- uauAUCUUUgGaUCUCCU-UCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 120679 0.66 0.999926
Target:  5'- -gAUGGA-----AGAGGAAGGGGuugACCa -3'
miRNA:   3'- uaUAUCUuuggaUCUCCUUCCCU---UGG- -5'
29004 3' -46.6 NC_006146.1 + 46955 0.66 0.999926
Target:  5'- ---aAGAcgaagGACCUgccGGAGcuGAGGGGACCg -3'
miRNA:   3'- uauaUCU-----UUGGA---UCUCc-UUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 111674 0.66 0.999924
Target:  5'- -cAUGGAGGCCaugucccUGGAGucguagguGGGGGAGCCc -3'
miRNA:   3'- uaUAUCUUUGG-------AUCUCc-------UUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 57739 0.66 0.999902
Target:  5'- -------cGCgaAGAGGGAGGGGGCUu -3'
miRNA:   3'- uauaucuuUGgaUCUCCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 40131 0.66 0.999902
Target:  5'- ---gGGAcACCgucuGGAGGGGGGCUg -3'
miRNA:   3'- uauaUCUuUGGaucuCCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 54814 0.66 0.999902
Target:  5'- --uUGGAgagGACCcGGcGGAGGGcGGGCCa -3'
miRNA:   3'- uauAUCU---UUGGaUCuCCUUCC-CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 33998 0.66 0.999902
Target:  5'- ---cGGugcACCUGGAaggcaGGggGGGggUCg -3'
miRNA:   3'- uauaUCuu-UGGAUCU-----CCuuCCCuuGG- -5'
29004 3' -46.6 NC_006146.1 + 26315 0.66 0.999902
Target:  5'- -cGUGGAAAUCaAGGuGGAgaAGGGGGCa -3'
miRNA:   3'- uaUAUCUUUGGaUCU-CCU--UCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 21403 0.66 0.9999
Target:  5'- cUAUGcGGACCUcagAGAGGGcaggguccccaugGGGGAGCUc -3'
miRNA:   3'- uAUAUcUUUGGA---UCUCCU-------------UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 138353 0.67 0.999872
Target:  5'- gGUAgcGGAGCCUcaGGAGGGuccccuccauAGGGuugAGCCa -3'
miRNA:   3'- -UAUauCUUUGGA--UCUCCU----------UCCC---UUGG- -5'
29004 3' -46.6 NC_006146.1 + 26278 0.67 0.999872
Target:  5'- ---cGGAAuuaGCCUGGGuGGAGGG-GCCg -3'
miRNA:   3'- uauaUCUU---UGGAUCUcCUUCCCuUGG- -5'
29004 3' -46.6 NC_006146.1 + 70088 0.67 0.999834
Target:  5'- ---gAGAAAUggGGaAGGAccgAGGGAACCc -3'
miRNA:   3'- uauaUCUUUGgaUC-UCCU---UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 128098 0.67 0.999834
Target:  5'- ---gAGggGCC--GAGGcAGGGGACa -3'
miRNA:   3'- uauaUCuuUGGauCUCCuUCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 31749 0.67 0.999834
Target:  5'- ---cAGgcGCCcccccGGGGGAcGGGAGCCc -3'
miRNA:   3'- uauaUCuuUGGa----UCUCCUuCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 128446 0.67 0.999834
Target:  5'- -----cAGACCgggcgggAGGGGGAGcGGGACCu -3'
miRNA:   3'- uauaucUUUGGa------UCUCCUUC-CCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 67241 0.67 0.999786
Target:  5'- ---aGGAAGCCacGGAGGcuGGGGGGAUa -3'
miRNA:   3'- uauaUCUUUGGa-UCUCC--UUCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 34781 0.67 0.999786
Target:  5'- cUAUAGGuuauuAACCUaguGGAGGAauAGGGuACUa -3'
miRNA:   3'- uAUAUCU-----UUGGA---UCUCCU--UCCCuUGG- -5'
29004 3' -46.6 NC_006146.1 + 138611 0.67 0.999786
Target:  5'- cUAUAGGuuauuAACCUaguGGAGGAauAGGGuACUa -3'
miRNA:   3'- uAUAUCU-----UUGGA---UCUCCU--UCCCuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.