Results 41 - 60 of 175 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29004 | 3' | -46.6 | NC_006146.1 | + | 34781 | 0.67 | 0.999786 |
Target: 5'- cUAUAGGuuauuAACCUaguGGAGGAauAGGGuACUa -3' miRNA: 3'- uAUAUCU-----UUGGA---UCUCCU--UCCCuUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 95564 | 0.67 | 0.999751 |
Target: 5'- -cAUGGAcACCUGGAcGGAgcuagauguuucuggGGcGGGGCCu -3' miRNA: 3'- uaUAUCUuUGGAUCU-CCU---------------UC-CCUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 133118 | 0.67 | 0.999751 |
Target: 5'- -gGUAGAAACaggAGAaauGGAgaugcuuuaaccuugGGGGGACCu -3' miRNA: 3'- uaUAUCUUUGga-UCU---CCU---------------UCCCUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 59726 | 0.67 | 0.999751 |
Target: 5'- gGUGUAG--GCCggguccacguacacgUAGAGGGAGGaGGCCa -3' miRNA: 3'- -UAUAUCuuUGG---------------AUCUCCUUCCcUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 153740 | 0.67 | 0.999726 |
Target: 5'- --cUGGGguGGCCggGGAGGGguGGGGAgugGCCa -3' miRNA: 3'- uauAUCU--UUGGa-UCUCCU--UCCCU---UGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 141429 | 0.67 | 0.999726 |
Target: 5'- --cUGGGguGGCCggGGAGGGguGGGGAgugGCCa -3' miRNA: 3'- uauAUCU--UUGGa-UCUCCU--UCCCU---UGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 144507 | 0.67 | 0.999726 |
Target: 5'- --cUGGGguGGCCggGGAGGGguGGGGAgugGCCa -3' miRNA: 3'- uauAUCU--UUGGa-UCUCCU--UCCCU---UGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 6108 | 0.67 | 0.999726 |
Target: 5'- -aAUGGAGGCaacggUGGAGGcgguGGGGAuCCa -3' miRNA: 3'- uaUAUCUUUGg----AUCUCCu---UCCCUuGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 150663 | 0.67 | 0.999726 |
Target: 5'- --cUGGGguGGCCggGGAGGGguGGGGAgugGCCa -3' miRNA: 3'- uauAUCU--UUGGa-UCUCCU--UCCCU---UGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 156818 | 0.67 | 0.999726 |
Target: 5'- --cUGGGguGGCCggGGAGGGguGGGGAgugGCCa -3' miRNA: 3'- uauAUCU--UUGGa-UCUCCU--UCCCU---UGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 50744 | 0.67 | 0.999726 |
Target: 5'- ----cGggGCgUc-GGGAAGGGGGCCg -3' miRNA: 3'- uauauCuuUGgAucUCCUUCCCUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 147585 | 0.67 | 0.999726 |
Target: 5'- --cUGGGguGGCCggGGAGGGguGGGGAgugGCCa -3' miRNA: 3'- uauAUCU--UUGGa-UCUCCU--UCCCU---UGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 169427 | 0.68 | 0.999651 |
Target: 5'- cGUGUGGAGGCCcgcggAGAGGccgugugugGAGGccGGGCCu -3' miRNA: 3'- -UAUAUCUUUGGa----UCUCC---------UUCC--CUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 170358 | 0.68 | 0.999651 |
Target: 5'- cGUGUGGAGGCCcgcggAGAGGccgugugugGAGGccGGGCCu -3' miRNA: 3'- -UAUAUCUUUGGa----UCUCC---------UUCC--CUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 168495 | 0.68 | 0.999651 |
Target: 5'- cGUGUGGAGGCCcgcggAGAGGccgugugugGAGGccGGGCCu -3' miRNA: 3'- -UAUAUCUUUGGa----UCUCC---------UUCC--CUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 77761 | 0.68 | 0.999651 |
Target: 5'- uUGUAGGGuuuguugcCCUGGAucGGAGGGGugguAACCa -3' miRNA: 3'- uAUAUCUUu-------GGAUCU--CCUUCCC----UUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 167563 | 0.68 | 0.999651 |
Target: 5'- cGUGUGGAGGCCcgcggAGAGGccgugugugGAGGccGGGCCu -3' miRNA: 3'- -UAUAUCUUUGGa----UCUCC---------UUCC--CUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 40320 | 0.68 | 0.999651 |
Target: 5'- -aGUAG--GCC-GGAGGAGGGuAGCCg -3' miRNA: 3'- uaUAUCuuUGGaUCUCCUUCCcUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 39570 | 0.68 | 0.999643 |
Target: 5'- ---cAGGAuCCUGGAGGGcaugaagAGGGAcuccaGCCc -3' miRNA: 3'- uauaUCUUuGGAUCUCCU-------UCCCU-----UGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 27 | 0.68 | 0.999559 |
Target: 5'- ---gAGggGCCgGGAuGGAuguuGGGGGACUu -3' miRNA: 3'- uauaUCuuUGGaUCU-CCU----UCCCUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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