miRNA display CGI


Results 61 - 80 of 175 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 3' -46.6 NC_006146.1 + 166951 0.68 0.999559
Target:  5'- ---gGGAGugCUGcugcauGAGGAGGGGAAa- -3'
miRNA:   3'- uauaUCUUugGAU------CUCCUUCCCUUgg -5'
29004 3' -46.6 NC_006146.1 + 114971 0.68 0.999559
Target:  5'- ---aGGAGGCagAGAGGGcGGGGAACg -3'
miRNA:   3'- uauaUCUUUGgaUCUCCU-UCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 4860 0.68 0.999559
Target:  5'- -aAUAGggGCa---GGGgcGGGGGCCa -3'
miRNA:   3'- uaUAUCuuUGgaucUCCuuCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 27 0.68 0.999559
Target:  5'- ---gAGggGCCgGGAuGGAuguuGGGGGACUu -3'
miRNA:   3'- uauaUCuuUGGaUCU-CCU----UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 34597 0.68 0.999312
Target:  5'- aGUGgguGGAGCCUGGAGGuAGGuauCCa -3'
miRNA:   3'- -UAUau-CUUUGGAUCUCCuUCCcuuGG- -5'
29004 3' -46.6 NC_006146.1 + 60474 0.68 0.999312
Target:  5'- ---gGGGAGCggugAGAGGccGGGGGGCCa -3'
miRNA:   3'- uauaUCUUUGga--UCUCCu-UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 76904 0.68 0.999312
Target:  5'- -cGUGGGAGCC-AGAGGugaccgcGGGGcugcAGCCg -3'
miRNA:   3'- uaUAUCUUUGGaUCUCCu------UCCC----UUGG- -5'
29004 3' -46.6 NC_006146.1 + 21580 0.68 0.999148
Target:  5'- -cGUGG-AGCCUaaggGGGGGAucaAGGGGGCa -3'
miRNA:   3'- uaUAUCuUUGGA----UCUCCU---UCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 46236 0.68 0.999148
Target:  5'- ----uGAAGCC-GGAGGGAGGG--CCg -3'
miRNA:   3'- uauauCUUUGGaUCUCCUUCCCuuGG- -5'
29004 3' -46.6 NC_006146.1 + 125708 0.69 0.998909
Target:  5'- ---gGGAGACggaggaagauGAGGAGGGGAGCg -3'
miRNA:   3'- uauaUCUUUGgau-------CUCCUUCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 70712 0.69 0.998719
Target:  5'- ---cGGGAGCUcaGGAGGAgcGGGGGGCUu -3'
miRNA:   3'- uauaUCUUUGGa-UCUCCU--UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 44763 0.69 0.998719
Target:  5'- uUGUcGggGCCcGGcGGGcGGGGAACCc -3'
miRNA:   3'- uAUAuCuuUGGaUC-UCCuUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 138429 0.69 0.998719
Target:  5'- aGUGgguGGAGCCUAGAGGuAGGuuuCCa -3'
miRNA:   3'- -UAUau-CUUUGGAUCUCCuUCCcuuGG- -5'
29004 3' -46.6 NC_006146.1 + 145328 0.69 0.998719
Target:  5'- ----uGAAAUUgGGAGGAaugaucacgGGGGAGCCa -3'
miRNA:   3'- uauauCUUUGGaUCUCCU---------UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 68590 0.69 0.998694
Target:  5'- aGUAUGGAGACUgcucAgcugauggcaguuGAGGAAGGGAggGCUg -3'
miRNA:   3'- -UAUAUCUUUGGa---U-------------CUCCUUCCCU--UGG- -5'
29004 3' -46.6 NC_006146.1 + 65199 0.69 0.998443
Target:  5'- --cUAGgcGCuCUGGGGGcccuGGGAGCCc -3'
miRNA:   3'- uauAUCuuUG-GAUCUCCuu--CCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 71251 0.69 0.998443
Target:  5'- ----uGggGCCUGGcGGggGGcGGCCu -3'
miRNA:   3'- uauauCuuUGGAUCuCCuuCCcUUGG- -5'
29004 3' -46.6 NC_006146.1 + 140527 0.69 0.998443
Target:  5'- ---cAGcAAACCUAGcccuGGGAGGGAcggcACCc -3'
miRNA:   3'- uauaUC-UUUGGAUCu---CCUUCCCU----UGG- -5'
29004 3' -46.6 NC_006146.1 + 48581 0.69 0.998443
Target:  5'- ----cGggGCCUcGGGGGucAGGGAgGCCa -3'
miRNA:   3'- uauauCuuUGGAuCUCCU--UCCCU-UGG- -5'
29004 3' -46.6 NC_006146.1 + 116746 0.69 0.998119
Target:  5'- ---aGGAgGACgaGGAGGAgggcaGGGGGGCCg -3'
miRNA:   3'- uauaUCU-UUGgaUCUCCU-----UCCCUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.