miRNA display CGI


Results 81 - 100 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 3' -46.6 NC_006146.1 + 116746 0.69 0.998119
Target:  5'- ---aGGAgGACgaGGAGGAgggcaGGGGGGCCg -3'
miRNA:   3'- uauaUCU-UUGgaUCUCCU-----UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 60958 0.7 0.997298
Target:  5'- ----uGAGGCCcGGGGGuGGGGggUCa -3'
miRNA:   3'- uauauCUUUGGaUCUCCuUCCCuuGG- -5'
29004 3' -46.6 NC_006146.1 + 43646 0.7 0.996787
Target:  5'- -cGUGGccGCCUGGGGaGAGGGGcCCg -3'
miRNA:   3'- uaUAUCuuUGGAUCUCcUUCCCUuGG- -5'
29004 3' -46.6 NC_006146.1 + 26173 0.7 0.996787
Target:  5'- ---aAGcgGCCUGGAGGGgauuaggucggAGGGGGCg -3'
miRNA:   3'- uauaUCuuUGGAUCUCCU-----------UCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 3237 0.7 0.996787
Target:  5'- ---gAGGAugUgaaggGGGGGAuAGGGGACCu -3'
miRNA:   3'- uauaUCUUugGa----UCUCCU-UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 11808 0.7 0.996199
Target:  5'- --cUGGGGACCcugcaggAGGGGAAGGugGGACCc -3'
miRNA:   3'- uauAUCUUUGGa------UCUCCUUCC--CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 154034 0.7 0.996199
Target:  5'- ---gGGggGCCggggagGGAGGcGGGGAggacagGCCa -3'
miRNA:   3'- uauaUCuuUGGa-----UCUCCuUCCCU------UGG- -5'
29004 3' -46.6 NC_006146.1 + 153890 0.7 0.996199
Target:  5'- ----cGggGCCUcggggagggagAGAGGAGGGGGAg- -3'
miRNA:   3'- uauauCuuUGGA-----------UCUCCUUCCCUUgg -5'
29004 3' -46.6 NC_006146.1 + 150956 0.7 0.996199
Target:  5'- ---gGGggGCCggggagGGAGGcGGGGAggacagGCCa -3'
miRNA:   3'- uauaUCuuUGGa-----UCUCCuUCCCU------UGG- -5'
29004 3' -46.6 NC_006146.1 + 157112 0.7 0.996199
Target:  5'- ---gGGggGCCggggagGGAGGcGGGGAggacagGCCa -3'
miRNA:   3'- uauaUCuuUGGa-----UCUCCuUCCCU------UGG- -5'
29004 3' -46.6 NC_006146.1 + 147878 0.7 0.996199
Target:  5'- ---gGGggGCCggggagGGAGGcGGGGAggacagGCCa -3'
miRNA:   3'- uauaUCuuUGGa-----UCUCCuUCCCU------UGG- -5'
29004 3' -46.6 NC_006146.1 + 144800 0.7 0.996199
Target:  5'- ---gGGggGCCggggagGGAGGcGGGGAggacagGCCa -3'
miRNA:   3'- uauaUCuuUGGa-----UCUCCuUCCCU------UGG- -5'
29004 3' -46.6 NC_006146.1 + 141579 0.7 0.996199
Target:  5'- ----cGggGCCUcggggagggagAGAGGAGGGGGAg- -3'
miRNA:   3'- uauauCuuUGGA-----------UCUCCUUCCCUUgg -5'
29004 3' -46.6 NC_006146.1 + 141722 0.7 0.996199
Target:  5'- ---gGGggGCCggggagGGAGGcGGGGAggacagGCCa -3'
miRNA:   3'- uauaUCuuUGGa-----UCUCCuUCCCU------UGG- -5'
29004 3' -46.6 NC_006146.1 + 170676 0.7 0.996199
Target:  5'- ---gGGAGGCC-AGGGGcgccccGGGGACCg -3'
miRNA:   3'- uauaUCUUUGGaUCUCCuu----CCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 144657 0.7 0.996199
Target:  5'- ----cGggGCCUcggggagggagAGAGGAGGGGGAg- -3'
miRNA:   3'- uauauCuuUGGA-----------UCUCCUUCCCUUgg -5'
29004 3' -46.6 NC_006146.1 + 147734 0.7 0.996199
Target:  5'- ----cGggGCCUcggggagggagAGAGGAGGGGGAg- -3'
miRNA:   3'- uauauCuuUGGA-----------UCUCCUUCCCUUgg -5'
29004 3' -46.6 NC_006146.1 + 150812 0.7 0.996199
Target:  5'- ----cGggGCCUcggggagggagAGAGGAGGGGGAg- -3'
miRNA:   3'- uauauCuuUGGA-----------UCUCCUUCCCUUgg -5'
29004 3' -46.6 NC_006146.1 + 156968 0.7 0.996199
Target:  5'- ----cGggGCCUcggggagggagAGAGGAGGGGGAg- -3'
miRNA:   3'- uauauCuuUGGA-----------UCUCCUUCCCUUgg -5'
29004 3' -46.6 NC_006146.1 + 17834 0.7 0.995525
Target:  5'- ---cAGu--UCUAG-GGAGGGGGACCa -3'
miRNA:   3'- uauaUCuuuGGAUCuCCUUCCCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.