miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 3' -46.6 NC_006146.1 + 27 0.68 0.999559
Target:  5'- ---gAGggGCCgGGAuGGAuguuGGGGGACUu -3'
miRNA:   3'- uauaUCuuUGGaUCU-CCU----UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 3237 0.7 0.996787
Target:  5'- ---gAGGAugUgaaggGGGGGAuAGGGGACCu -3'
miRNA:   3'- uauaUCUUugGa----UCUCCU-UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 4860 0.68 0.999559
Target:  5'- -aAUAGggGCa---GGGgcGGGGGCCa -3'
miRNA:   3'- uaUAUCuuUGgaucUCCuuCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 5204 0.71 0.991794
Target:  5'- -----uGGGCCUGGGGGAgcuAGGGGugCa -3'
miRNA:   3'- uauaucUUUGGAUCUCCU---UCCCUugG- -5'
29004 3' -46.6 NC_006146.1 + 6108 0.67 0.999726
Target:  5'- -aAUGGAGGCaacggUGGAGGcgguGGGGAuCCa -3'
miRNA:   3'- uaUAUCUUUGg----AUCUCCu---UCCCUuGG- -5'
29004 3' -46.6 NC_006146.1 + 7913 0.73 0.971788
Target:  5'- ---aGGAGGCC--GAGGAgaaGGGGGACCc -3'
miRNA:   3'- uauaUCUUUGGauCUCCU---UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 8254 0.76 0.917722
Target:  5'- cUGUGGAGAgUagggAGGGGGAGGGAGCg -3'
miRNA:   3'- uAUAUCUUUgGa---UCUCCUUCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 11808 0.7 0.996199
Target:  5'- --cUGGGGACCcugcaggAGGGGAAGGugGGACCc -3'
miRNA:   3'- uauAUCUUUGGa------UCUCCUUCC--CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 12981 0.71 0.992901
Target:  5'- ---gAGAGucgGCCUAGGcccggggaguGGAGGGGGAUCg -3'
miRNA:   3'- uauaUCUU---UGGAUCU----------CCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 14019 0.66 0.999926
Target:  5'- --cUGGAAGgC-GGAGGGcAGGGAGCa -3'
miRNA:   3'- uauAUCUUUgGaUCUCCU-UCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 14756 0.7 0.995525
Target:  5'- ---cAGu--UCUAG-GGAGGGGGACCa -3'
miRNA:   3'- uauaUCuuuGGAUCuCCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 14857 0.74 0.953824
Target:  5'- ---gGGAGGCCgAGGGGGcagccAGGGAGCUg -3'
miRNA:   3'- uauaUCUUUGGaUCUCCU-----UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 15293 0.72 0.982019
Target:  5'- ----cGGAGCgaGGGGGAGGaGGGGCCg -3'
miRNA:   3'- uauauCUUUGgaUCUCCUUC-CCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 16059 0.71 0.992901
Target:  5'- ---gAGAGucgGCCUAGGcccggggaguGGAGGGGGAUCg -3'
miRNA:   3'- uauaUCUU---UGGAUCU----------CCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 17834 0.7 0.995525
Target:  5'- ---cAGu--UCUAG-GGAGGGGGACCa -3'
miRNA:   3'- uauaUCuuuGGAUCuCCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 18232 0.79 0.820484
Target:  5'- uUGUGGAcGGCCUGGGGGAgcucauggacagccuGGGGAGCg -3'
miRNA:   3'- uAUAUCU-UUGGAUCUCCU---------------UCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 19137 0.71 0.992901
Target:  5'- ---gAGAGucgGCCUAGGcccggggaguGGAGGGGGAUCg -3'
miRNA:   3'- uauaUCUU---UGGAUCU----------CCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 20912 0.7 0.995525
Target:  5'- ---cAGu--UCUAG-GGAGGGGGACCa -3'
miRNA:   3'- uauaUCuuuGGAUCuCCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 21403 0.66 0.9999
Target:  5'- cUAUGcGGACCUcagAGAGGGcaggguccccaugGGGGAGCUc -3'
miRNA:   3'- uAUAUcUUUGGA---UCUCCU-------------UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 21580 0.68 0.999148
Target:  5'- -cGUGG-AGCCUaaggGGGGGAucaAGGGGGCa -3'
miRNA:   3'- uaUAUCuUUGGA----UCUCCU---UCCCUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.