miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 3' -46.6 NC_006146.1 + 22215 0.71 0.992901
Target:  5'- ---gAGAGucgGCCUAGGcccggggaguGGAGGGGGAUCg -3'
miRNA:   3'- uauaUCUU---UGGAUCU----------CCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 23989 0.7 0.995525
Target:  5'- ---cAGu--UCUAG-GGAGGGGGACCa -3'
miRNA:   3'- uauaUCuuuGGAUCuCCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 25293 0.71 0.992901
Target:  5'- ---gAGAGucgGCCUAGGcccggggaguGGAGGGGGAUCg -3'
miRNA:   3'- uauaUCUU---UGGAUCU----------CCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 26173 0.7 0.996787
Target:  5'- ---aAGcgGCCUGGAGGGgauuaggucggAGGGGGCg -3'
miRNA:   3'- uauaUCuuUGGAUCUCCU-----------UCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 26278 0.67 0.999872
Target:  5'- ---cGGAAuuaGCCUGGGuGGAGGG-GCCg -3'
miRNA:   3'- uauaUCUU---UGGAUCUcCUUCCCuUGG- -5'
29004 3' -46.6 NC_006146.1 + 26315 0.66 0.999902
Target:  5'- -cGUGGAAAUCaAGGuGGAgaAGGGGGCa -3'
miRNA:   3'- uaUAUCUUUGGaUCU-CCU--UCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 27067 0.7 0.995525
Target:  5'- ---cAGu--UCUAG-GGAGGGGGACCa -3'
miRNA:   3'- uauaUCuuuGGAUCuCCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 28371 0.71 0.992901
Target:  5'- ---gAGAGucgGCCUAGGcccggggaguGGAGGGGGAUCg -3'
miRNA:   3'- uauaUCUU---UGGAUCU----------CCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 30906 0.71 0.994757
Target:  5'- -gAUAGGAACCcacuUGGuGGcccagGGGGGAGCCc -3'
miRNA:   3'- uaUAUCUUUGG----AUCuCC-----UUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 31684 0.71 0.994757
Target:  5'- ---cAGGGACCagGGaAGGGuGGGGGACCg -3'
miRNA:   3'- uauaUCUUUGGa-UC-UCCU-UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 31749 0.67 0.999834
Target:  5'- ---cAGgcGCCcccccGGGGGAcGGGAGCCc -3'
miRNA:   3'- uauaUCuuUGGa----UCUCCUuCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 33210 0.73 0.974667
Target:  5'- ---gGGAGGCC-GGAGG--GGGAGCCg -3'
miRNA:   3'- uauaUCUUUGGaUCUCCuuCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 33998 0.66 0.999902
Target:  5'- ---cGGugcACCUGGAaggcaGGggGGGggUCg -3'
miRNA:   3'- uauaUCuu-UGGAUCU-----CCuuCCCuuGG- -5'
29004 3' -46.6 NC_006146.1 + 34207 0.66 0.999973
Target:  5'- ---cAGGGACCUcGcgccgcccgcuucauGGGggGGGAgGCCg -3'
miRNA:   3'- uauaUCUUUGGAuC---------------UCCuuCCCU-UGG- -5'
29004 3' -46.6 NC_006146.1 + 34597 0.68 0.999312
Target:  5'- aGUGgguGGAGCCUGGAGGuAGGuauCCa -3'
miRNA:   3'- -UAUau-CUUUGGAUCUCCuUCCcuuGG- -5'
29004 3' -46.6 NC_006146.1 + 34781 0.67 0.999786
Target:  5'- cUAUAGGuuauuAACCUaguGGAGGAauAGGGuACUa -3'
miRNA:   3'- uAUAUCU-----UUGGA---UCUCCU--UCCCuUGG- -5'
29004 3' -46.6 NC_006146.1 + 34854 1.1 0.020647
Target:  5'- uAUAUAGAAACCUAGAGGAAGGGAACCc -3'
miRNA:   3'- -UAUAUCUUUGGAUCUCCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 39039 0.66 0.999945
Target:  5'- -cAUGGggGCC-AGcAGGcAGGGGcCCu -3'
miRNA:   3'- uaUAUCuuUGGaUC-UCCuUCCCUuGG- -5'
29004 3' -46.6 NC_006146.1 + 39570 0.68 0.999643
Target:  5'- ---cAGGAuCCUGGAGGGcaugaagAGGGAcuccaGCCc -3'
miRNA:   3'- uauaUCUUuGGAUCUCCU-------UCCCU-----UGG- -5'
29004 3' -46.6 NC_006146.1 + 40131 0.66 0.999902
Target:  5'- ---gGGAcACCgucuGGAGGGGGGCUg -3'
miRNA:   3'- uauaUCUuUGGaucuCCUUCCCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.