miRNA display CGI


Results 41 - 60 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 3' -46.6 NC_006146.1 + 40320 0.68 0.999651
Target:  5'- -aGUAG--GCC-GGAGGAGGGuAGCCg -3'
miRNA:   3'- uaUAUCuuUGGaUCUCCUUCCcUUGG- -5'
29004 3' -46.6 NC_006146.1 + 41062 0.75 0.929392
Target:  5'- --cUGGggGCCUcGGGGuGGAGGGAgGCCa -3'
miRNA:   3'- uauAUCuuUGGA-UCUC-CUUCCCU-UGG- -5'
29004 3' -46.6 NC_006146.1 + 42285 0.72 0.987639
Target:  5'- -gGUGGugGCggGGAGGAGgagcGGGAGCCg -3'
miRNA:   3'- uaUAUCuuUGgaUCUCCUU----CCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 42994 0.66 0.999945
Target:  5'- -gGUAGAAuugccGCCgggugAGAGGugcGAGGGcuGCCg -3'
miRNA:   3'- uaUAUCUU-----UGGa----UCUCC---UUCCCu-UGG- -5'
29004 3' -46.6 NC_006146.1 + 43646 0.7 0.996787
Target:  5'- -cGUGGccGCCUGGGGaGAGGGGcCCg -3'
miRNA:   3'- uaUAUCuuUGGAUCUCcUUCCCUuGG- -5'
29004 3' -46.6 NC_006146.1 + 44763 0.69 0.998719
Target:  5'- uUGUcGggGCCcGGcGGGcGGGGAACCc -3'
miRNA:   3'- uAUAuCuuUGGaUC-UCCuUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 45075 0.73 0.977069
Target:  5'- ---gAGguGCCUcguggggAGAGGGAGGGuGCCg -3'
miRNA:   3'- uauaUCuuUGGA-------UCUCCUUCCCuUGG- -5'
29004 3' -46.6 NC_006146.1 + 46236 0.68 0.999148
Target:  5'- ----uGAAGCC-GGAGGGAGGG--CCg -3'
miRNA:   3'- uauauCUUUGGaUCUCCUUCCCuuGG- -5'
29004 3' -46.6 NC_006146.1 + 46955 0.66 0.999926
Target:  5'- ---aAGAcgaagGACCUgccGGAGcuGAGGGGACCg -3'
miRNA:   3'- uauaUCU-----UUGGA---UCUCc-UUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 48006 0.66 0.999926
Target:  5'- gGUGgcgGGAGGCUUGGcgGGGGAGGcacggcGGGCCg -3'
miRNA:   3'- -UAUa--UCUUUGGAUC--UCCUUCC------CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 48581 0.69 0.998443
Target:  5'- ----cGggGCCUcGGGGGucAGGGAgGCCa -3'
miRNA:   3'- uauauCuuUGGAuCUCCU--UCCCU-UGG- -5'
29004 3' -46.6 NC_006146.1 + 50744 0.67 0.999726
Target:  5'- ----cGggGCgUc-GGGAAGGGGGCCg -3'
miRNA:   3'- uauauCuuUGgAucUCCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 51571 0.74 0.953824
Target:  5'- --cUGGgcGCCgccgGGAGGGgcccgGGGGAGCCa -3'
miRNA:   3'- uauAUCuuUGGa---UCUCCU-----UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 51895 0.67 0.999786
Target:  5'- -gGUGGAGGCUgcGucGgcGGGGGCCu -3'
miRNA:   3'- uaUAUCUUUGGauCucCuuCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 54814 0.66 0.999902
Target:  5'- --uUGGAgagGACCcGGcGGAGGGcGGGCCa -3'
miRNA:   3'- uauAUCU---UUGGaUCuCCUUCC-CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 57045 0.71 0.994757
Target:  5'- ----cGAAGCCgccaggguugAGGcGGGAGGGGGCCu -3'
miRNA:   3'- uauauCUUUGGa---------UCU-CCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 57314 0.66 0.999969
Target:  5'- uUGUGGA--CCUGGAcgcguggcucucuGGggGcGGGGCCc -3'
miRNA:   3'- uAUAUCUuuGGAUCU-------------CCuuC-CCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 57739 0.66 0.999902
Target:  5'- -------cGCgaAGAGGGAGGGGGCUu -3'
miRNA:   3'- uauaucuuUGgaUCUCCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 59726 0.67 0.999751
Target:  5'- gGUGUAG--GCCggguccacguacacgUAGAGGGAGGaGGCCa -3'
miRNA:   3'- -UAUAUCuuUGG---------------AUCUCCUUCCcUUGG- -5'
29004 3' -46.6 NC_006146.1 + 60138 0.73 0.971788
Target:  5'- ---gAGGGACCUGGuGGggGGuGuguGCCa -3'
miRNA:   3'- uauaUCUUUGGAUCuCCuuCC-Cu--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.