miRNA display CGI


Results 61 - 80 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 3' -46.6 NC_006146.1 + 60474 0.68 0.999312
Target:  5'- ---gGGGAGCggugAGAGGccGGGGGGCCa -3'
miRNA:   3'- uauaUCUUUGga--UCUCCu-UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 60958 0.7 0.997298
Target:  5'- ----uGAGGCCcGGGGGuGGGGggUCa -3'
miRNA:   3'- uauauCUUUGGaUCUCCuUCCCuuGG- -5'
29004 3' -46.6 NC_006146.1 + 65199 0.69 0.998443
Target:  5'- --cUAGgcGCuCUGGGGGcccuGGGAGCCc -3'
miRNA:   3'- uauAUCuuUG-GAUCUCCuu--CCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 67241 0.67 0.999786
Target:  5'- ---aGGAAGCCacGGAGGcuGGGGGGAUa -3'
miRNA:   3'- uauaUCUUUGGa-UCUCC--UUCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 67479 0.66 0.999945
Target:  5'- ----cGAAGCCccgguccaGGAGcGAGGGGAGCa -3'
miRNA:   3'- uauauCUUUGGa-------UCUC-CUUCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 68590 0.69 0.998694
Target:  5'- aGUAUGGAGACUgcucAgcugauggcaguuGAGGAAGGGAggGCUg -3'
miRNA:   3'- -UAUAUCUUUGGa---U-------------CUCCUUCCCU--UGG- -5'
29004 3' -46.6 NC_006146.1 + 69241 0.68 0.999559
Target:  5'- --uUGGAcgauGACCUGGAGGAgcuggaggAGGuGGACg -3'
miRNA:   3'- uauAUCU----UUGGAUCUCCU--------UCC-CUUGg -5'
29004 3' -46.6 NC_006146.1 + 70088 0.67 0.999834
Target:  5'- ---gAGAAAUggGGaAGGAccgAGGGAACCc -3'
miRNA:   3'- uauaUCUUUGgaUC-UCCU---UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 70712 0.69 0.998719
Target:  5'- ---cGGGAGCUcaGGAGGAgcGGGGGGCUu -3'
miRNA:   3'- uauaUCUUUGGa-UCUCCU--UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 71251 0.69 0.998443
Target:  5'- ----uGggGCCUGGcGGggGGcGGCCu -3'
miRNA:   3'- uauauCuuUGGAUCuCCuuCCcUUGG- -5'
29004 3' -46.6 NC_006146.1 + 76904 0.68 0.999312
Target:  5'- -cGUGGGAGCC-AGAGGugaccgcGGGGcugcAGCCg -3'
miRNA:   3'- uaUAUCUUUGGaUCUCCu------UCCC----UUGG- -5'
29004 3' -46.6 NC_006146.1 + 77761 0.68 0.999651
Target:  5'- uUGUAGGGuuuguugcCCUGGAucGGAGGGGugguAACCa -3'
miRNA:   3'- uAUAUCUUu-------GGAUCU--CCUUCCC----UUGG- -5'
29004 3' -46.6 NC_006146.1 + 79695 0.66 0.999926
Target:  5'- ---cAGAGACCggccaacaggcAGGcGGggGGGAACa -3'
miRNA:   3'- uauaUCUUUGGa----------UCU-CCuuCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 83764 0.66 0.99997
Target:  5'- -aGUGGGuGGCCUGGuGGGAGGucGCa -3'
miRNA:   3'- uaUAUCU-UUGGAUCuCCUUCCcuUGg -5'
29004 3' -46.6 NC_006146.1 + 89390 0.72 0.985763
Target:  5'- -gGUGGgcACCgAGGGGAGcacaaagacggauGGGAGCCg -3'
miRNA:   3'- uaUAUCuuUGGaUCUCCUU-------------CCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 90066 0.71 0.990555
Target:  5'- ---aGGGAGCCUAgGAGGcggugcagGGGGGAGCa -3'
miRNA:   3'- uauaUCUUUGGAU-CUCC--------UUCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 90172 0.72 0.982019
Target:  5'- -gGUAGAGGCCgcggcAGGGGAgguagugcAGGGGGCa -3'
miRNA:   3'- uaUAUCUUUGGa----UCUCCU--------UCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 90280 0.72 0.988578
Target:  5'- -gGUAGAGGCCguggucgaggacGAGGAAGGGGcagaggggagggGCCu -3'
miRNA:   3'- uaUAUCUUUGGau----------CUCCUUCCCU------------UGG- -5'
29004 3' -46.6 NC_006146.1 + 95564 0.67 0.999751
Target:  5'- -cAUGGAcACCUGGAcGGAgcuagauguuucuggGGcGGGGCCu -3'
miRNA:   3'- uaUAUCUuUGGAUCU-CCU---------------UC-CCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 96747 0.66 0.999926
Target:  5'- ---cAGAuuaacGGCCUGGAgaaGGAGcGGGAGCUc -3'
miRNA:   3'- uauaUCU-----UUGGAUCU---CCUU-CCCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.