miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 3' -46.6 NC_006146.1 + 170676 0.7 0.996199
Target:  5'- ---gGGAGGCC-AGGGGcgccccGGGGACCg -3'
miRNA:   3'- uauaUCUUUGGaUCUCCuu----CCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 170404 0.76 0.910839
Target:  5'- --cUGGggGCCUcgggggcGGAGGggGGGGuCCc -3'
miRNA:   3'- uauAUCuuUGGA-------UCUCCuuCCCUuGG- -5'
29004 3' -46.6 NC_006146.1 + 170358 0.68 0.999651
Target:  5'- cGUGUGGAGGCCcgcggAGAGGccgugugugGAGGccGGGCCu -3'
miRNA:   3'- -UAUAUCUUUGGa----UCUCC---------UUCC--CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 170080 0.71 0.992796
Target:  5'- -cGUGGGgauGGCCggcgGGAGGGgccggcgccgcagGGGGGGCCg -3'
miRNA:   3'- uaUAUCU---UUGGa---UCUCCU-------------UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 169473 0.76 0.910839
Target:  5'- --cUGGggGCCUcgggggcGGAGGggGGGGuCCc -3'
miRNA:   3'- uauAUCuuUGGA-------UCUCCuuCCCUuGG- -5'
29004 3' -46.6 NC_006146.1 + 169427 0.68 0.999651
Target:  5'- cGUGUGGAGGCCcgcggAGAGGccgugugugGAGGccGGGCCu -3'
miRNA:   3'- -UAUAUCUUUGGa----UCUCC---------UUCC--CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 169148 0.71 0.993602
Target:  5'- -cGUGGGgauGGCCggcgGGAGGGgccggcgccugcagGGGGGGCCg -3'
miRNA:   3'- uaUAUCU---UUGGa---UCUCCU--------------UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 168587 0.73 0.971788
Target:  5'- aAUGUGGuugauGGCCUGGAacugucGGAAGGaGGGCCu -3'
miRNA:   3'- -UAUAUCu----UUGGAUCU------CCUUCC-CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 168541 0.76 0.910839
Target:  5'- --cUGGggGCCUcgggggcGGAGGggGGGGuCCc -3'
miRNA:   3'- uauAUCuuUGGA-------UCUCCuuCCCUuGG- -5'
29004 3' -46.6 NC_006146.1 + 168495 0.68 0.999651
Target:  5'- cGUGUGGAGGCCcgcggAGAGGccgugugugGAGGccGGGCCu -3'
miRNA:   3'- -UAUAUCUUUGGa----UCUCC---------UUCC--CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 168476 0.66 0.99994
Target:  5'- ---cAGAuccGGCCUcacguccacggucgGGGGGccGGGGACCa -3'
miRNA:   3'- uauaUCU---UUGGA--------------UCUCCuuCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 168216 0.71 0.993602
Target:  5'- -cGUGGGgauGGCCggcgGGAGGGgccggcgccugcagGGGGGGCCg -3'
miRNA:   3'- uaUAUCU---UUGGa---UCUCCU--------------UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 167609 0.76 0.910839
Target:  5'- --cUGGggGCCUcgggggcGGAGGggGGGGuCCc -3'
miRNA:   3'- uauAUCuuUGGA-------UCUCCuuCCCUuGG- -5'
29004 3' -46.6 NC_006146.1 + 167563 0.68 0.999651
Target:  5'- cGUGUGGAGGCCcgcggAGAGGccgugugugGAGGccGGGCCu -3'
miRNA:   3'- -UAUAUCUUUGGa----UCUCC---------UUCC--CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 167284 0.71 0.993602
Target:  5'- -cGUGGGgauGGCCggcgGGAGGGgccggcgccugcagGGGGGGCCg -3'
miRNA:   3'- uaUAUCU---UUGGa---UCUCCU--------------UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 166951 0.68 0.999559
Target:  5'- ---gGGAGugCUGcugcauGAGGAGGGGAAa- -3'
miRNA:   3'- uauaUCUUugGAU------CUCCUUCCCUUgg -5'
29004 3' -46.6 NC_006146.1 + 166861 0.71 0.990555
Target:  5'- ---aGGAAGCCcggcgGGAGGG-GGGAGCg -3'
miRNA:   3'- uauaUCUUUGGa----UCUCCUuCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 166758 0.66 0.999926
Target:  5'- ----cGGGACCagcAGuGGcGAGGGGACCa -3'
miRNA:   3'- uauauCUUUGGa--UCuCC-UUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 166136 0.71 0.993885
Target:  5'- ---aGGAGACggAGGGGGAGGGAcUCu -3'
miRNA:   3'- uauaUCUUUGgaUCUCCUUCCCUuGG- -5'
29004 3' -46.6 NC_006146.1 + 162034 0.77 0.868469
Target:  5'- --cUGGGAGCCUGGGGGcGGGGGcagGCUg -3'
miRNA:   3'- uauAUCUUUGGAUCUCCuUCCCU---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.