miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 3' -46.6 NC_006146.1 + 158565 0.72 0.984072
Target:  5'- ----uGAGGCCcAGGGGcGAGGGGACUg -3'
miRNA:   3'- uauauCUUUGGaUCUCC-UUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 158525 0.72 0.984072
Target:  5'- cUGUAGcccguGACuCUGGAGGAcGGGGACg -3'
miRNA:   3'- uAUAUCu----UUG-GAUCUCCUuCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 157600 0.71 0.990423
Target:  5'- ---cGGAGACCaGGAGGAcgccuggAGGcGGACCc -3'
miRNA:   3'- uauaUCUUUGGaUCUCCU-------UCC-CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 157208 0.79 0.797951
Target:  5'- ---gAGAGGCCgaaagcGGGGGggGGGGACUg -3'
miRNA:   3'- uauaUCUUUGGa-----UCUCCuuCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 157112 0.7 0.996199
Target:  5'- ---gGGggGCCggggagGGAGGcGGGGAggacagGCCa -3'
miRNA:   3'- uauaUCuuUGGa-----UCUCCuUCCCU------UGG- -5'
29004 3' -46.6 NC_006146.1 + 156968 0.7 0.996199
Target:  5'- ----cGggGCCUcggggagggagAGAGGAGGGGGAg- -3'
miRNA:   3'- uauauCuuUGGA-----------UCUCCUUCCCUUgg -5'
29004 3' -46.6 NC_006146.1 + 156818 0.67 0.999726
Target:  5'- --cUGGGguGGCCggGGAGGGguGGGGAgugGCCa -3'
miRNA:   3'- uauAUCU--UUGGa-UCUCCU--UCCCU---UGG- -5'
29004 3' -46.6 NC_006146.1 + 155486 0.72 0.984072
Target:  5'- ----uGAGGCCcAGGGGcGAGGGGACUg -3'
miRNA:   3'- uauauCUUUGGaUCUCC-UUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 155446 0.72 0.984072
Target:  5'- cUGUAGcccguGACuCUGGAGGAcGGGGACg -3'
miRNA:   3'- uAUAUCu----UUG-GAUCUCCUuCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 154522 0.71 0.990423
Target:  5'- ---cGGAGACCaGGAGGAcgccuggAGGcGGACCc -3'
miRNA:   3'- uauaUCUUUGGaUCUCCU-------UCC-CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 154474 0.66 0.999926
Target:  5'- gGUGUAGGagcgGACCUuaaAGGAguAGGGAAUa -3'
miRNA:   3'- -UAUAUCU----UUGGAuc-UCCU--UCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 154130 0.79 0.797951
Target:  5'- ---gAGAGGCCgaaagcGGGGGggGGGGACUg -3'
miRNA:   3'- uauaUCUUUGGa-----UCUCCuuCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 154034 0.7 0.996199
Target:  5'- ---gGGggGCCggggagGGAGGcGGGGAggacagGCCa -3'
miRNA:   3'- uauaUCuuUGGa-----UCUCCuUCCCU------UGG- -5'
29004 3' -46.6 NC_006146.1 + 153890 0.7 0.996199
Target:  5'- ----cGggGCCUcggggagggagAGAGGAGGGGGAg- -3'
miRNA:   3'- uauauCuuUGGA-----------UCUCCUUCCCUUgg -5'
29004 3' -46.6 NC_006146.1 + 153740 0.67 0.999726
Target:  5'- --cUGGGguGGCCggGGAGGGguGGGGAgugGCCa -3'
miRNA:   3'- uauAUCU--UUGGa-UCUCCU--UCCCU---UGG- -5'
29004 3' -46.6 NC_006146.1 + 153606 0.66 0.99997
Target:  5'- --uUGGggGCggCUGGGGGucGGGcuGGCCu -3'
miRNA:   3'- uauAUCuuUG--GAUCUCCuuCCC--UUGG- -5'
29004 3' -46.6 NC_006146.1 + 152408 0.72 0.984072
Target:  5'- ----uGAGGCCcAGGGGcGAGGGGACUg -3'
miRNA:   3'- uauauCUUUGGaUCUCC-UUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 152368 0.72 0.984072
Target:  5'- cUGUAGcccguGACuCUGGAGGAcGGGGACg -3'
miRNA:   3'- uAUAUCu----UUG-GAUCUCCUuCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 151444 0.71 0.990423
Target:  5'- ---cGGAGACCaGGAGGAcgccuggAGGcGGACCc -3'
miRNA:   3'- uauaUCUUUGGaUCUCCU-------UCC-CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 151052 0.79 0.797951
Target:  5'- ---gAGAGGCCgaaagcGGGGGggGGGGACUg -3'
miRNA:   3'- uauaUCUUUGGa-----UCUCCuuCCCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.