miRNA display CGI


Results 41 - 60 of 175 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 3' -46.6 NC_006146.1 + 150956 0.7 0.996199
Target:  5'- ---gGGggGCCggggagGGAGGcGGGGAggacagGCCa -3'
miRNA:   3'- uauaUCuuUGGa-----UCUCCuUCCCU------UGG- -5'
29004 3' -46.6 NC_006146.1 + 150812 0.7 0.996199
Target:  5'- ----cGggGCCUcggggagggagAGAGGAGGGGGAg- -3'
miRNA:   3'- uauauCuuUGGA-----------UCUCCUUCCCUUgg -5'
29004 3' -46.6 NC_006146.1 + 150663 0.67 0.999726
Target:  5'- --cUGGGguGGCCggGGAGGGguGGGGAgugGCCa -3'
miRNA:   3'- uauAUCU--UUGGa-UCUCCU--UCCCU---UGG- -5'
29004 3' -46.6 NC_006146.1 + 150528 0.66 0.99997
Target:  5'- --uUGGggGCggCUGGGGGucGGGcuGGCCu -3'
miRNA:   3'- uauAUCuuUG--GAUCUCCuuCCC--UUGG- -5'
29004 3' -46.6 NC_006146.1 + 149330 0.72 0.984072
Target:  5'- ----uGAGGCCcAGGGGcGAGGGGACUg -3'
miRNA:   3'- uauauCUUUGGaUCUCC-UUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 149290 0.72 0.984072
Target:  5'- cUGUAGcccguGACuCUGGAGGAcGGGGACg -3'
miRNA:   3'- uAUAUCu----UUG-GAUCUCCUuCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 148366 0.71 0.990423
Target:  5'- ---cGGAGACCaGGAGGAcgccuggAGGcGGACCc -3'
miRNA:   3'- uauaUCUUUGGaUCUCCU-------UCC-CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 147974 0.79 0.797951
Target:  5'- ---gAGAGGCCgaaagcGGGGGggGGGGACUg -3'
miRNA:   3'- uauaUCUUUGGa-----UCUCCuuCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 147878 0.7 0.996199
Target:  5'- ---gGGggGCCggggagGGAGGcGGGGAggacagGCCa -3'
miRNA:   3'- uauaUCuuUGGa-----UCUCCuUCCCU------UGG- -5'
29004 3' -46.6 NC_006146.1 + 147734 0.7 0.996199
Target:  5'- ----cGggGCCUcggggagggagAGAGGAGGGGGAg- -3'
miRNA:   3'- uauauCuuUGGA-----------UCUCCUUCCCUUgg -5'
29004 3' -46.6 NC_006146.1 + 147585 0.67 0.999726
Target:  5'- --cUGGGguGGCCggGGAGGGguGGGGAgugGCCa -3'
miRNA:   3'- uauAUCU--UUGGa-UCUCCU--UCCCU---UGG- -5'
29004 3' -46.6 NC_006146.1 + 147450 0.66 0.99997
Target:  5'- --uUGGggGCggCUGGGGGucGGGcuGGCCu -3'
miRNA:   3'- uauAUCuuUG--GAUCUCCuuCCC--UUGG- -5'
29004 3' -46.6 NC_006146.1 + 146252 0.72 0.984072
Target:  5'- ----uGAGGCCcAGGGGcGAGGGGACUg -3'
miRNA:   3'- uauauCUUUGGaUCUCC-UUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 146212 0.72 0.984072
Target:  5'- cUGUAGcccguGACuCUGGAGGAcGGGGACg -3'
miRNA:   3'- uAUAUCu----UUG-GAUCUCCUuCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 145328 0.69 0.998719
Target:  5'- ----uGAAAUUgGGAGGAaugaucacgGGGGAGCCa -3'
miRNA:   3'- uauauCUUUGGaUCUCCU---------UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 145288 0.71 0.990423
Target:  5'- ---cGGAGACCaGGAGGAcgccuggAGGcGGACCc -3'
miRNA:   3'- uauaUCUUUGGaUCUCCU-------UCC-CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 144896 0.79 0.797951
Target:  5'- ---gAGAGGCCgaaagcGGGGGggGGGGACUg -3'
miRNA:   3'- uauaUCUUUGGa-----UCUCCuuCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 144800 0.7 0.996199
Target:  5'- ---gGGggGCCggggagGGAGGcGGGGAggacagGCCa -3'
miRNA:   3'- uauaUCuuUGGa-----UCUCCuUCCCU------UGG- -5'
29004 3' -46.6 NC_006146.1 + 144657 0.7 0.996199
Target:  5'- ----cGggGCCUcggggagggagAGAGGAGGGGGAg- -3'
miRNA:   3'- uauauCuuUGGA-----------UCUCCUUCCCUUgg -5'
29004 3' -46.6 NC_006146.1 + 144507 0.67 0.999726
Target:  5'- --cUGGGguGGCCggGGAGGGguGGGGAgugGCCa -3'
miRNA:   3'- uauAUCU--UUGGa-UCUCCU--UCCCU---UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.