Results 1 - 20 of 175 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29004 | 3' | -46.6 | NC_006146.1 | + | 34854 | 1.1 | 0.020647 |
Target: 5'- uAUAUAGAAACCUAGAGGAAGGGAACCc -3' miRNA: 3'- -UAUAUCUUUGGAUCUCCUUCCCUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 16059 | 0.71 | 0.992901 |
Target: 5'- ---gAGAGucgGCCUAGGcccggggaguGGAGGGGGAUCg -3' miRNA: 3'- uauaUCUU---UGGAUCU----------CCUUCCCUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 22215 | 0.71 | 0.992901 |
Target: 5'- ---gAGAGucgGCCUAGGcccggggaguGGAGGGGGAUCg -3' miRNA: 3'- uauaUCUU---UGGAUCU----------CCUUCCCUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 138037 | 0.66 | 0.999973 |
Target: 5'- ---cAGGGACCUcGcgccgcccgcuucauGGGggGGGAgGCCg -3' miRNA: 3'- uauaUCUUUGGAuC---------------UCCuuCCCU-UGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 168541 | 0.76 | 0.910839 |
Target: 5'- --cUGGggGCCUcgggggcGGAGGggGGGGuCCc -3' miRNA: 3'- uauAUCuuUGGA-------UCUCCuuCCCUuGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 169473 | 0.76 | 0.910839 |
Target: 5'- --cUGGggGCCUcgggggcGGAGGggGGGGuCCc -3' miRNA: 3'- uauAUCuuUGGA-------UCUCCuuCCCUuGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 60138 | 0.73 | 0.971788 |
Target: 5'- ---gAGGGACCUGGuGGggGGuGuguGCCa -3' miRNA: 3'- uauaUCUUUGGAUCuCCuuCC-Cu--UGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 45075 | 0.73 | 0.977069 |
Target: 5'- ---gAGguGCCUcguggggAGAGGGAGGGuGCCg -3' miRNA: 3'- uauaUCuuUGGA-------UCUCCUUCCCuUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 90280 | 0.72 | 0.988578 |
Target: 5'- -gGUAGAGGCCguggucgaggacGAGGAAGGGGcagaggggagggGCCu -3' miRNA: 3'- uaUAUCUUUGGau----------CUCCUUCCCU------------UGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 12981 | 0.71 | 0.992901 |
Target: 5'- ---gAGAGucgGCCUAGGcccggggaguGGAGGGGGAUCg -3' miRNA: 3'- uauaUCUU---UGGAUCU----------CCUUCCCUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 166861 | 0.71 | 0.990555 |
Target: 5'- ---aGGAAGCCcggcgGGAGGG-GGGAGCg -3' miRNA: 3'- uauaUCUUUGGa----UCUCCUuCCCUUGg -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 42285 | 0.72 | 0.987639 |
Target: 5'- -gGUGGugGCggGGAGGAGgagcGGGAGCCg -3' miRNA: 3'- uaUAUCuuUGgaUCUCCUU----CCCUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 138684 | 0.95 | 0.16695 |
Target: 5'- uAUAUAGGAACCUAGAGaAAGGGAACCc -3' miRNA: 3'- -UAUAUCUUUGGAUCUCcUUCCCUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 5204 | 0.71 | 0.991794 |
Target: 5'- -----uGGGCCUGGGGGAgcuAGGGGugCa -3' miRNA: 3'- uauaucUUUGGAUCUCCU---UCCCUugG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 97846 | 0.81 | 0.695187 |
Target: 5'- ------cGACCUGGAGGAGGGGGccGCCg -3' miRNA: 3'- uauaucuUUGGAUCUCCUUCCCU--UGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 90172 | 0.72 | 0.982019 |
Target: 5'- -gGUAGAGGCCgcggcAGGGGAgguagugcAGGGGGCa -3' miRNA: 3'- uaUAUCUUUGGa----UCUCCU--------UCCCUUGg -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 170080 | 0.71 | 0.992796 |
Target: 5'- -cGUGGGgauGGCCggcgGGAGGGgccggcgccgcagGGGGGGCCg -3' miRNA: 3'- uaUAUCU---UUGGa---UCUCCU-------------UCCCUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 19137 | 0.71 | 0.992901 |
Target: 5'- ---gAGAGucgGCCUAGGcccggggaguGGAGGGGGAUCg -3' miRNA: 3'- uauaUCUU---UGGAUCU----------CCUUCCCUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 167609 | 0.76 | 0.910839 |
Target: 5'- --cUGGggGCCUcgggggcGGAGGggGGGGuCCc -3' miRNA: 3'- uauAUCuuUGGA-------UCUCCuuCCCUuGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 170404 | 0.76 | 0.910839 |
Target: 5'- --cUGGggGCCUcgggggcGGAGGggGGGGuCCc -3' miRNA: 3'- uauAUCuuUGGA-------UCUCCuuCCCUuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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