miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 3' -46.6 NC_006146.1 + 167284 0.71 0.993602
Target:  5'- -cGUGGGgauGGCCggcgGGAGGGgccggcgccugcagGGGGGGCCg -3'
miRNA:   3'- uaUAUCU---UUGGa---UCUCCU--------------UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 22215 0.71 0.992901
Target:  5'- ---gAGAGucgGCCUAGGcccggggaguGGAGGGGGAUCg -3'
miRNA:   3'- uauaUCUU---UGGAUCU----------CCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 42285 0.72 0.987639
Target:  5'- -gGUGGugGCggGGAGGAGgagcGGGAGCCg -3'
miRNA:   3'- uaUAUCuuUGgaUCUCCUU----CCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 167609 0.76 0.910839
Target:  5'- --cUGGggGCCUcgggggcGGAGGggGGGGuCCc -3'
miRNA:   3'- uauAUCuuUGGA-------UCUCCuuCCCUuGG- -5'
29004 3' -46.6 NC_006146.1 + 3237 0.7 0.996787
Target:  5'- ---gAGGAugUgaaggGGGGGAuAGGGGACCu -3'
miRNA:   3'- uauaUCUUugGa----UCUCCU-UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 30906 0.71 0.994757
Target:  5'- -gAUAGGAACCcacuUGGuGGcccagGGGGGAGCCc -3'
miRNA:   3'- uaUAUCUUUGG----AUCuCC-----UUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 16059 0.71 0.992901
Target:  5'- ---gAGAGucgGCCUAGGcccggggaguGGAGGGGGAUCg -3'
miRNA:   3'- uauaUCUU---UGGAUCU----------CCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 97846 0.81 0.695187
Target:  5'- ------cGACCUGGAGGAGGGGGccGCCg -3'
miRNA:   3'- uauaucuUUGGAUCUCCUUCCCU--UGG- -5'
29004 3' -46.6 NC_006146.1 + 57045 0.71 0.994757
Target:  5'- ----cGAAGCCgccaggguugAGGcGGGAGGGGGCCu -3'
miRNA:   3'- uauauCUUUGGa---------UCU-CCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 138684 0.95 0.16695
Target:  5'- uAUAUAGGAACCUAGAGaAAGGGAACCc -3'
miRNA:   3'- -UAUAUCUUUGGAUCUCcUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 19137 0.71 0.992901
Target:  5'- ---gAGAGucgGCCUAGGcccggggaguGGAGGGGGAUCg -3'
miRNA:   3'- uauaUCUU---UGGAUCU----------CCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 168216 0.71 0.993602
Target:  5'- -cGUGGGgauGGCCggcgGGAGGGgccggcgccugcagGGGGGGCCg -3'
miRNA:   3'- uaUAUCU---UUGGa---UCUCCU--------------UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 5204 0.71 0.991794
Target:  5'- -----uGGGCCUGGGGGAgcuAGGGGugCa -3'
miRNA:   3'- uauaucUUUGGAUCUCCU---UCCCUugG- -5'
29004 3' -46.6 NC_006146.1 + 90280 0.72 0.988578
Target:  5'- -gGUAGAGGCCguggucgaggacGAGGAAGGGGcagaggggagggGCCu -3'
miRNA:   3'- uaUAUCUUUGGau----------CUCCUUCCCU------------UGG- -5'
29004 3' -46.6 NC_006146.1 + 60138 0.73 0.971788
Target:  5'- ---gAGGGACCUGGuGGggGGuGuguGCCa -3'
miRNA:   3'- uauaUCUUUGGAUCuCCuuCC-Cu--UGG- -5'
29004 3' -46.6 NC_006146.1 + 168541 0.76 0.910839
Target:  5'- --cUGGggGCCUcgggggcGGAGGggGGGGuCCc -3'
miRNA:   3'- uauAUCuuUGGA-------UCUCCuuCCCUuGG- -5'
29004 3' -46.6 NC_006146.1 + 65199 0.69 0.998443
Target:  5'- --cUAGgcGCuCUGGGGGcccuGGGAGCCc -3'
miRNA:   3'- uauAUCuuUG-GAUCUCCuu--CCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 60958 0.7 0.997298
Target:  5'- ----uGAGGCCcGGGGGuGGGGggUCa -3'
miRNA:   3'- uauauCUUUGGaUCUCCuUCCCuuGG- -5'
29004 3' -46.6 NC_006146.1 + 23989 0.7 0.995525
Target:  5'- ---cAGu--UCUAG-GGAGGGGGACCa -3'
miRNA:   3'- uauaUCuuuGGAUCuCCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 14756 0.7 0.995525
Target:  5'- ---cAGu--UCUAG-GGAGGGGGACCa -3'
miRNA:   3'- uauaUCuuuGGAUCuCCUUCCCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.