miRNA display CGI


Results 61 - 80 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 3' -46.6 NC_006146.1 + 138353 0.67 0.999872
Target:  5'- gGUAgcGGAGCCUcaGGAGGGuccccuccauAGGGuugAGCCa -3'
miRNA:   3'- -UAUauCUUUGGA--UCUCCU----------UCCC---UUGG- -5'
29004 3' -46.6 NC_006146.1 + 169473 0.76 0.910839
Target:  5'- --cUGGggGCCUcgggggcGGAGGggGGGGuCCc -3'
miRNA:   3'- uauAUCuuUGGA-------UCUCCuuCCCUuGG- -5'
29004 3' -46.6 NC_006146.1 + 45075 0.73 0.977069
Target:  5'- ---gAGguGCCUcguggggAGAGGGAGGGuGCCg -3'
miRNA:   3'- uauaUCuuUGGA-------UCUCCUUCCCuUGG- -5'
29004 3' -46.6 NC_006146.1 + 90066 0.71 0.990555
Target:  5'- ---aGGGAGCCUAgGAGGcggugcagGGGGGAGCa -3'
miRNA:   3'- uauaUCUUUGGAU-CUCC--------UUCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 170080 0.71 0.992796
Target:  5'- -cGUGGGgauGGCCggcgGGAGGGgccggcgccgcagGGGGGGCCg -3'
miRNA:   3'- uaUAUCU---UUGGa---UCUCCU-------------UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 25293 0.71 0.992901
Target:  5'- ---gAGAGucgGCCUAGGcccggggaguGGAGGGGGAUCg -3'
miRNA:   3'- uauaUCUU---UGGAUCU----------CCUUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 168216 0.71 0.993602
Target:  5'- -cGUGGGgauGGCCggcgGGAGGGgccggcgccugcagGGGGGGCCg -3'
miRNA:   3'- uaUAUCU---UUGGa---UCUCCU--------------UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 30906 0.71 0.994757
Target:  5'- -gAUAGGAACCcacuUGGuGGcccagGGGGGAGCCc -3'
miRNA:   3'- uaUAUCUUUGG----AUCuCC-----UUCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 42994 0.66 0.999945
Target:  5'- -gGUAGAAuugccGCCgggugAGAGGugcGAGGGcuGCCg -3'
miRNA:   3'- uaUAUCUU-----UGGa----UCUCC---UUCCCu-UGG- -5'
29004 3' -46.6 NC_006146.1 + 154474 0.66 0.999926
Target:  5'- gGUGUAGGagcgGACCUuaaAGGAguAGGGAAUa -3'
miRNA:   3'- -UAUAUCU----UUGGAuc-UCCU--UCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 79695 0.66 0.999926
Target:  5'- ---cAGAGACCggccaacaggcAGGcGGggGGGAACa -3'
miRNA:   3'- uauaUCUUUGGa----------UCU-CCuuCCCUUGg -5'
29004 3' -46.6 NC_006146.1 + 27 0.68 0.999559
Target:  5'- ---gAGggGCCgGGAuGGAuguuGGGGGACUu -3'
miRNA:   3'- uauaUCuuUGGaUCU-CCU----UCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 39570 0.68 0.999643
Target:  5'- ---cAGGAuCCUGGAGGGcaugaagAGGGAcuccaGCCc -3'
miRNA:   3'- uauaUCUUuGGAUCUCCU-------UCCCU-----UGG- -5'
29004 3' -46.6 NC_006146.1 + 34781 0.67 0.999786
Target:  5'- cUAUAGGuuauuAACCUaguGGAGGAauAGGGuACUa -3'
miRNA:   3'- uAUAUCU-----UUGGA---UCUCCU--UCCCuUGG- -5'
29004 3' -46.6 NC_006146.1 + 51895 0.67 0.999786
Target:  5'- -gGUGGAGGCUgcGucGgcGGGGGCCu -3'
miRNA:   3'- uaUAUCUUUGGauCucCuuCCCUUGG- -5'
29004 3' -46.6 NC_006146.1 + 54814 0.66 0.999902
Target:  5'- --uUGGAgagGACCcGGcGGAGGGcGGGCCa -3'
miRNA:   3'- uauAUCU---UUGGaUCuCCUUCC-CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 154522 0.71 0.990423
Target:  5'- ---cGGAGACCaGGAGGAcgccuggAGGcGGACCc -3'
miRNA:   3'- uauaUCUUUGGaUCUCCU-------UCC-CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 145288 0.71 0.990423
Target:  5'- ---cGGAGACCaGGAGGAcgccuggAGGcGGACCc -3'
miRNA:   3'- uauaUCUUUGGaUCUCCU-------UCC-CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 148366 0.71 0.990423
Target:  5'- ---cGGAGACCaGGAGGAcgccuggAGGcGGACCc -3'
miRNA:   3'- uauaUCUUUGGaUCUCCU-------UCC-CUUGG- -5'
29004 3' -46.6 NC_006146.1 + 69241 0.68 0.999559
Target:  5'- --uUGGAcgauGACCUGGAGGAgcuggaggAGGuGGACg -3'
miRNA:   3'- uauAUCU----UUGGAUCUCCU--------UCC-CUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.