Results 21 - 40 of 175 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29004 | 3' | -46.6 | NC_006146.1 | + | 6108 | 0.67 | 0.999726 |
Target: 5'- -aAUGGAGGCaacggUGGAGGcgguGGGGAuCCa -3' miRNA: 3'- uaUAUCUUUGg----AUCUCCu---UCCCUuGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 95564 | 0.67 | 0.999751 |
Target: 5'- -cAUGGAcACCUGGAcGGAgcuagauguuucuggGGcGGGGCCu -3' miRNA: 3'- uaUAUCUuUGGAUCU-CCU---------------UC-CCUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 120679 | 0.66 | 0.999926 |
Target: 5'- -gAUGGA-----AGAGGAAGGGGuugACCa -3' miRNA: 3'- uaUAUCUuuggaUCUCCUUCCCU---UGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 168476 | 0.66 | 0.99994 |
Target: 5'- ---cAGAuccGGCCUcacguccacggucgGGGGGccGGGGACCa -3' miRNA: 3'- uauaUCU---UUGGA--------------UCUCCuuCCCUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 124501 | 0.66 | 0.99994 |
Target: 5'- ---gGGAcucGGCCUGgucucggcccuggcGAGGGAcGGGGGCCu -3' miRNA: 3'- uauaUCU---UUGGAU--------------CUCCUU-CCCUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 141294 | 0.66 | 0.99997 |
Target: 5'- --uUGGggGCggCUGGGGGucGGGcuGGCCu -3' miRNA: 3'- uauAUCuuUG--GAUCUCCuuCCC--UUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 144372 | 0.66 | 0.99997 |
Target: 5'- --uUGGggGCggCUGGGGGucGGGcuGGCCu -3' miRNA: 3'- uauAUCuuUG--GAUCUCCuuCCC--UUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 147450 | 0.66 | 0.99997 |
Target: 5'- --uUGGggGCggCUGGGGGucGGGcuGGCCu -3' miRNA: 3'- uauAUCuuUG--GAUCUCCuuCCC--UUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 150528 | 0.66 | 0.99997 |
Target: 5'- --uUGGggGCggCUGGGGGucGGGcuGGCCu -3' miRNA: 3'- uauAUCuuUG--GAUCUCCuuCCC--UUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 153606 | 0.66 | 0.99997 |
Target: 5'- --uUGGggGCggCUGGGGGucGGGcuGGCCu -3' miRNA: 3'- uauAUCuuUG--GAUCUCCuuCCC--UUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 14019 | 0.66 | 0.999926 |
Target: 5'- --cUGGAAGgC-GGAGGGcAGGGAGCa -3' miRNA: 3'- uauAUCUUUgGaUCUCCU-UCCCUUGg -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 46955 | 0.66 | 0.999926 |
Target: 5'- ---aAGAcgaagGACCUgccGGAGcuGAGGGGACCg -3' miRNA: 3'- uauaUCU-----UUGGA---UCUCc-UUCCCUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 59726 | 0.67 | 0.999751 |
Target: 5'- gGUGUAG--GCCggguccacguacacgUAGAGGGAGGaGGCCa -3' miRNA: 3'- -UAUAUCuuUGG---------------AUCUCCUUCCcUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 128446 | 0.67 | 0.999834 |
Target: 5'- -----cAGACCgggcgggAGGGGGAGcGGGACCu -3' miRNA: 3'- uauaucUUUGGa------UCUCCUUC-CCUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 31749 | 0.67 | 0.999834 |
Target: 5'- ---cAGgcGCCcccccGGGGGAcGGGAGCCc -3' miRNA: 3'- uauaUCuuUGGa----UCUCCUuCCCUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 128098 | 0.67 | 0.999834 |
Target: 5'- ---gAGggGCC--GAGGcAGGGGACa -3' miRNA: 3'- uauaUCuuUGGauCUCCuUCCCUUGg -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 26278 | 0.67 | 0.999872 |
Target: 5'- ---cGGAAuuaGCCUGGGuGGAGGG-GCCg -3' miRNA: 3'- uauaUCUU---UGGAUCUcCUUCCCuUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 21403 | 0.66 | 0.9999 |
Target: 5'- cUAUGcGGACCUcagAGAGGGcaggguccccaugGGGGAGCUc -3' miRNA: 3'- uAUAUcUUUGGA---UCUCCU-------------UCCCUUGG- -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 26315 | 0.66 | 0.999902 |
Target: 5'- -cGUGGAAAUCaAGGuGGAgaAGGGGGCa -3' miRNA: 3'- uaUAUCUUUGGaUCU-CCU--UCCCUUGg -5' |
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29004 | 3' | -46.6 | NC_006146.1 | + | 111674 | 0.66 | 0.999924 |
Target: 5'- -cAUGGAGGCCaugucccUGGAGucguagguGGGGGAGCCc -3' miRNA: 3'- uaUAUCUUUGG-------AUCUCc-------UUCCCUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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