miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 5' -64.4 NC_006146.1 + 31377 0.66 0.561871
Target:  5'- ---cCCCUuggcccccauacagaCCUCCUCCUacuaaacaccaggcACCCCCCCg -3'
miRNA:   3'- auuaGGGA---------------GGGGGGGGA--------------UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 4912 0.66 0.560918
Target:  5'- -cAUCCCUaCUCUuuggaUCCCUGCUCCUCCUc -3'
miRNA:   3'- auUAGGGA-GGGG-----GGGGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 28928 0.66 0.560918
Target:  5'- ---aCCCgagcagCCCCgCCCC-GCCCgCCCg -3'
miRNA:   3'- auuaGGGa-----GGGG-GGGGaUGGGgGGGa -5'
29004 5' -64.4 NC_006146.1 + 35558 0.66 0.559015
Target:  5'- ---cCCCUCCUagaaauuaggcgCCCgUGCCUCCCCUc -3'
miRNA:   3'- auuaGGGAGGGg-----------GGGgAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 150688 0.66 0.557114
Target:  5'- gAAUCCUgcaccaguacaugCCCagCCUCCUGCgCCCCCg -3'
miRNA:   3'- aUUAGGGa------------GGG--GGGGGAUGgGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 84470 0.66 0.551421
Target:  5'- ---cCCCUUCaagCCCagCUGCCCCCCUa -3'
miRNA:   3'- auuaGGGAGGg--GGGg-GAUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 57169 0.66 0.551421
Target:  5'- cAcgCCUUCCUCaCCCCaguggGCCCCCUg- -3'
miRNA:   3'- aUuaGGGAGGGG-GGGGa----UGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 31748 0.66 0.551421
Target:  5'- cAAUUgCCUCCCCUauguacaaCaCUGCCCCCaCCUg -3'
miRNA:   3'- aUUAG-GGAGGGGGg-------G-GAUGGGGG-GGA- -5'
29004 5' -64.4 NC_006146.1 + 27936 0.66 0.541974
Target:  5'- --nUCCCUCUcguCCUCCCcGCCUCuCCCa -3'
miRNA:   3'- auuAGGGAGG---GGGGGGaUGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 102272 0.66 0.541974
Target:  5'- ---cCCCUCguuggucuCCCCgCCaGCCCUCCCUu -3'
miRNA:   3'- auuaGGGAG--------GGGGgGGaUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 44875 0.66 0.541974
Target:  5'- cAGUCCCUCCCggCCCagcagcagaagCCcACCgCCCCa -3'
miRNA:   3'- aUUAGGGAGGG--GGG-----------GGaUGGgGGGGa -5'
29004 5' -64.4 NC_006146.1 + 130059 0.66 0.541974
Target:  5'- ----gCCUCCaagagcgCCCCCUGCCCCUuaCCa -3'
miRNA:   3'- auuagGGAGGg------GGGGGAUGGGGG--GGa -5'
29004 5' -64.4 NC_006146.1 + 126883 0.66 0.541974
Target:  5'- ---gCCCUCggCCgCCCCCU-CCCCgCCg -3'
miRNA:   3'- auuaGGGAG--GG-GGGGGAuGGGGgGGa -5'
29004 5' -64.4 NC_006146.1 + 42089 0.66 0.541974
Target:  5'- ---cCCCUCUgCCgCCgcCCCUCCCUg -3'
miRNA:   3'- auuaGGGAGGgGGgGGauGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 148900 0.66 0.541974
Target:  5'- cAAUCCCUuggggucuugCCCUCCaCCaGCUUCCCCg -3'
miRNA:   3'- aUUAGGGA----------GGGGGG-GGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 106667 0.66 0.53915
Target:  5'- ---cCCCUCCCgCCCCgGCCcaggcgcagaugugCCUCCUg -3'
miRNA:   3'- auuaGGGAGGGgGGGGaUGG--------------GGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 48296 0.66 0.53258
Target:  5'- ---cUCCUCCgCCCCUcGCCCUCCa- -3'
miRNA:   3'- auuaGGGAGGgGGGGGaUGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 75581 0.66 0.53258
Target:  5'- aAAUCUCUCCCagaCCCuccgcgCCUACUgCCCCa -3'
miRNA:   3'- aUUAGGGAGGG---GGG------GGAUGGgGGGGa -5'
29004 5' -64.4 NC_006146.1 + 119320 0.66 0.53258
Target:  5'- ----gCCUCaguCCCCCCUucggccgcgccGCCUCCCCa -3'
miRNA:   3'- auuagGGAGg--GGGGGGA-----------UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 65531 0.66 0.53258
Target:  5'- ---aUCCUCCUCCUCCUcagaggaagagAUCUCCCCg -3'
miRNA:   3'- auuaGGGAGGGGGGGGA-----------UGGGGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.