Results 1 - 20 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29004 | 5' | -64.4 | NC_006146.1 | + | 4912 | 0.66 | 0.560918 |
Target: 5'- -cAUCCCUaCUCUuuggaUCCCUGCUCCUCCUc -3' miRNA: 3'- auUAGGGA-GGGG-----GGGGAUGGGGGGGA- -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 42089 | 0.66 | 0.541974 |
Target: 5'- ---cCCCUCUgCCgCCgcCCCUCCCUg -3' miRNA: 3'- auuaGGGAGGgGGgGGauGGGGGGGA- -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 137869 | 0.66 | 0.523246 |
Target: 5'- -uGUCCCgggCCCCgCCCCggGCCggcagggggUCCCCg -3' miRNA: 3'- auUAGGGa--GGGG-GGGGa-UGG---------GGGGGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 111460 | 0.66 | 0.513975 |
Target: 5'- gAGUCCUgCCCCCugCCCUGCgCCUUCg -3' miRNA: 3'- aUUAGGGaGGGGG--GGGAUGgGGGGGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 167053 | 0.66 | 0.523246 |
Target: 5'- gUGGUCCagggcgaCCCCCCUUACCCgCCg- -3' miRNA: 3'- -AUUAGGgag----GGGGGGGAUGGGgGGga -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 169687 | 0.66 | 0.522316 |
Target: 5'- ---gCCCgCCCCCgggucuuCCCggGCUCCCCCUc -3' miRNA: 3'- auuaGGGaGGGGG-------GGGa-UGGGGGGGA- -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 65531 | 0.66 | 0.53258 |
Target: 5'- ---aUCCUCCUCCUCCUcagaggaagagAUCUCCCCg -3' miRNA: 3'- auuaGGGAGGGGGGGGA-----------UGGGGGGGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 106667 | 0.66 | 0.53915 |
Target: 5'- ---cCCCUCCCgCCCCgGCCcaggcgcagaugugCCUCCUg -3' miRNA: 3'- auuaGGGAGGGgGGGGaUGG--------------GGGGGA- -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 170619 | 0.66 | 0.522316 |
Target: 5'- ---gCCCgCCCCCgggucuuCCCggGCUCCCCCUc -3' miRNA: 3'- auuaGGGaGGGGG-------GGGa-UGGGGGGGA- -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 31377 | 0.66 | 0.561871 |
Target: 5'- ---cCCCUuggcccccauacagaCCUCCUCCUacuaaacaccaggcACCCCCCCg -3' miRNA: 3'- auuaGGGA---------------GGGGGGGGA--------------UGGGGGGGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 27936 | 0.66 | 0.541974 |
Target: 5'- --nUCCCUCUcguCCUCCCcGCCUCuCCCa -3' miRNA: 3'- auuAGGGAGG---GGGGGGaUGGGG-GGGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 48296 | 0.66 | 0.53258 |
Target: 5'- ---cUCCUCCgCCCCUcGCCCUCCa- -3' miRNA: 3'- auuaGGGAGGgGGGGGaUGGGGGGga -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 44875 | 0.66 | 0.541974 |
Target: 5'- cAGUCCCUCCCggCCCagcagcagaagCCcACCgCCCCa -3' miRNA: 3'- aUUAGGGAGGG--GGG-----------GGaUGGgGGGGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 126883 | 0.66 | 0.541974 |
Target: 5'- ---gCCCUCggCCgCCCCCU-CCCCgCCg -3' miRNA: 3'- auuaGGGAG--GG-GGGGGAuGGGGgGGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 119320 | 0.66 | 0.53258 |
Target: 5'- ----gCCUCaguCCCCCCUucggccgcgccGCCUCCCCa -3' miRNA: 3'- auuagGGAGg--GGGGGGA-----------UGGGGGGGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 75581 | 0.66 | 0.53258 |
Target: 5'- aAAUCUCUCCCagaCCCuccgcgCCUACUgCCCCa -3' miRNA: 3'- aUUAGGGAGGG---GGG------GGAUGGgGGGGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 55934 | 0.66 | 0.513975 |
Target: 5'- --uUCCC-CgCCCUCUCUGCCUCCuCCa -3' miRNA: 3'- auuAGGGaG-GGGGGGGAUGGGGG-GGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 130059 | 0.66 | 0.541974 |
Target: 5'- ----gCCUCCaagagcgCCCCCUGCCCCUuaCCa -3' miRNA: 3'- auuagGGAGGg------GGGGGAUGGGGG--GGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 167823 | 0.66 | 0.522316 |
Target: 5'- ---gCCCgCCCCCgggucuuCCCggGCUCCCCCUc -3' miRNA: 3'- auuaGGGaGGGGG-------GGGa-UGGGGGGGA- -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 168755 | 0.66 | 0.522316 |
Target: 5'- ---gCCCgCCCCCgggucuuCCCggGCUCCCCCUc -3' miRNA: 3'- auuaGGGaGGGGG-------GGGa-UGGGGGGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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