miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 5' -64.4 NC_006146.1 + 102272 0.66 0.541974
Target:  5'- ---cCCCUCguuggucuCCCCgCCaGCCCUCCCUu -3'
miRNA:   3'- auuaGGGAG--------GGGGgGGaUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 119320 0.66 0.53258
Target:  5'- ----gCCUCaguCCCCCCUucggccgcgccGCCUCCCCa -3'
miRNA:   3'- auuagGGAGg--GGGGGGA-----------UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 126883 0.66 0.541974
Target:  5'- ---gCCCUCggCCgCCCCCU-CCCCgCCg -3'
miRNA:   3'- auuaGGGAG--GG-GGGGGAuGGGGgGGa -5'
29004 5' -64.4 NC_006146.1 + 44875 0.66 0.541974
Target:  5'- cAGUCCCUCCCggCCCagcagcagaagCCcACCgCCCCa -3'
miRNA:   3'- aUUAGGGAGGG--GGG-----------GGaUGGgGGGGa -5'
29004 5' -64.4 NC_006146.1 + 167053 0.66 0.523246
Target:  5'- gUGGUCCagggcgaCCCCCCUUACCCgCCg- -3'
miRNA:   3'- -AUUAGGgag----GGGGGGGAUGGGgGGga -5'
29004 5' -64.4 NC_006146.1 + 4912 0.66 0.560918
Target:  5'- -cAUCCCUaCUCUuuggaUCCCUGCUCCUCCUc -3'
miRNA:   3'- auUAGGGA-GGGG-----GGGGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 137869 0.66 0.523246
Target:  5'- -uGUCCCgggCCCCgCCCCggGCCggcagggggUCCCCg -3'
miRNA:   3'- auUAGGGa--GGGG-GGGGa-UGG---------GGGGGa -5'
29004 5' -64.4 NC_006146.1 + 55934 0.66 0.513975
Target:  5'- --uUCCC-CgCCCUCUCUGCCUCCuCCa -3'
miRNA:   3'- auuAGGGaG-GGGGGGGAUGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 126775 0.67 0.504772
Target:  5'- cAcgUCCUgCCCCCCCU-CCUCgCCg -3'
miRNA:   3'- aUuaGGGAgGGGGGGGAuGGGGgGGa -5'
29004 5' -64.4 NC_006146.1 + 155614 0.67 0.495641
Target:  5'- ---cCCCUCCUCCCCCU-CgCUCCg- -3'
miRNA:   3'- auuaGGGAGGGGGGGGAuGgGGGGga -5'
29004 5' -64.4 NC_006146.1 + 156867 0.67 0.495641
Target:  5'- uUGcgCCUgCCCCCgCCUGCUCCCUg- -3'
miRNA:   3'- -AUuaGGGaGGGGGgGGAUGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 128350 0.67 0.504772
Target:  5'- gAAUUCagcgCCCCCCCa---CCCCCCg -3'
miRNA:   3'- aUUAGGga--GGGGGGGgaugGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 156093 0.67 0.504772
Target:  5'- ---gCCCUCCUCCggCCCggccgGCCUCUCCUu -3'
miRNA:   3'- auuaGGGAGGGGG--GGGa----UGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 76999 0.67 0.459907
Target:  5'- ----gCCUCCgugcuggcCCCCCCUGCcgcaaauuccgCCCCCCUu -3'
miRNA:   3'- auuagGGAGG--------GGGGGGAUG-----------GGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 110780 0.67 0.459907
Target:  5'- aGGUCCCUCCCCcggCCCCUugCacagaaCgCCa -3'
miRNA:   3'- aUUAGGGAGGGG---GGGGAugGg-----GgGGa -5'
29004 5' -64.4 NC_006146.1 + 14372 0.67 0.468716
Target:  5'- gGGUCCCgggaucucgCCUCCCgCU-CCCCUCCg -3'
miRNA:   3'- aUUAGGGa--------GGGGGGgGAuGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 21315 0.67 0.495641
Target:  5'- ----gCCUCCUCUCCC-GCCgCCCCUu -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGgGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 120166 0.67 0.504772
Target:  5'- ---cCCCUUCCCgacgCCCCgucGCCCCCgCUc -3'
miRNA:   3'- auuaGGGAGGGG----GGGGa--UGGGGGgGA- -5'
29004 5' -64.4 NC_006146.1 + 20227 0.67 0.468716
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCUCCc -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 23305 0.67 0.468716
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCUCCc -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.