miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 5' -64.4 NC_006146.1 + 63804 0.67 0.477609
Target:  5'- ---cCCCUUCCCagaCCCacccACUCCCCCg -3'
miRNA:   3'- auuaGGGAGGGGg--GGGa---UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 75939 0.67 0.504772
Target:  5'- uUAAUgCCUggcugcacaCCCCCCUCUACCgcagcggccacgUCCCCUg -3'
miRNA:   3'- -AUUAgGGA---------GGGGGGGGAUGG------------GGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 110780 0.67 0.459907
Target:  5'- aGGUCCCUCCCCcggCCCCUugCacagaaCgCCa -3'
miRNA:   3'- aUUAGGGAGGGG---GGGGAugGg-----GgGGa -5'
29004 5' -64.4 NC_006146.1 + 14372 0.67 0.468716
Target:  5'- gGGUCCCgggaucucgCCUCCCgCU-CCCCUCCg -3'
miRNA:   3'- aUUAGGGa--------GGGGGGgGAuGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 21315 0.67 0.495641
Target:  5'- ----gCCUCCUCUCCC-GCCgCCCCUu -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGgGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 9128 0.67 0.486586
Target:  5'- aGAUUCaggCCCCCgCCCaggcGCCCCCUCg -3'
miRNA:   3'- aUUAGGga-GGGGG-GGGa---UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 156867 0.67 0.495641
Target:  5'- uUGcgCCUgCCCCCgCCUGCUCCCUg- -3'
miRNA:   3'- -AUuaGGGaGGGGGgGGAUGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 96178 0.67 0.495641
Target:  5'- gGGUCCCUCCagggCCUuucuggCCCUgagcguaaGCCCCCCUg -3'
miRNA:   3'- aUUAGGGAGG----GGG------GGGA--------UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 162990 0.67 0.468716
Target:  5'- gGGUCCC-CCUUCUCCUcgGCCUCCUCUu -3'
miRNA:   3'- aUUAGGGaGGGGGGGGA--UGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 129841 0.67 0.468716
Target:  5'- --cUCCCUCCa-CCCCgagGCCCCCa-- -3'
miRNA:   3'- auuAGGGAGGggGGGGa--UGGGGGgga -5'
29004 5' -64.4 NC_006146.1 + 14071 0.67 0.468716
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCUCCc -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 109220 0.67 0.468716
Target:  5'- cGGUCCCcaacccgugCCCCCCUCUcuCCaCCUCCUg -3'
miRNA:   3'- aUUAGGGa--------GGGGGGGGAu-GG-GGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 29461 0.67 0.468716
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCUCCc -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 26383 0.67 0.468716
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCUCCc -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 23305 0.67 0.468716
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCUCCc -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 17149 0.67 0.468716
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCUCCc -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 54567 0.68 0.409009
Target:  5'- -cGUCCCUUCgCCgCCUuCCCCCuCCUc -3'
miRNA:   3'- auUAGGGAGGgGGgGGAuGGGGG-GGA- -5'
29004 5' -64.4 NC_006146.1 + 122891 0.68 0.451188
Target:  5'- -cGUgCCUCCCCCgCCaAgCCUCCCg -3'
miRNA:   3'- auUAgGGAGGGGGgGGaUgGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 33853 0.68 0.423911
Target:  5'- gUGGUCCCcggaaccccaggCCCCCaCCCggccuCCUCCCCg -3'
miRNA:   3'- -AUUAGGGa-----------GGGGG-GGGau---GGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 70629 0.68 0.400872
Target:  5'- --cUgCCUCCgCCCCaUUGCCCCCaCCa -3'
miRNA:   3'- auuAgGGAGGgGGGG-GAUGGGGG-GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.