miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 5' -64.4 NC_006146.1 + 34888 1.05 0.001106
Target:  5'- gUAAUCCCUCCCCCCCCUACCCCCCCUc -3'
miRNA:   3'- -AUUAGGGAGGGGGGGGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 138721 0.93 0.008597
Target:  5'- ---aUCCUCCCCCCCCUACCCCCCCc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 55864 0.84 0.038014
Target:  5'- ---cCCCUCCUCCUCCUACUCCCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 4769 0.81 0.0545
Target:  5'- gAGUCCCUCCCCCUCCgucUCCUCCCUg -3'
miRNA:   3'- aUUAGGGAGGGGGGGGau-GGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 162647 0.79 0.079831
Target:  5'- --cUCCCUCCCCCuCCCUACUCUCCa- -3'
miRNA:   3'- auuAGGGAGGGGG-GGGAUGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 167123 0.78 0.092847
Target:  5'- ---cCCCcCCCCCCCCccCCCCCCCg -3'
miRNA:   3'- auuaGGGaGGGGGGGGauGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 93064 0.78 0.095203
Target:  5'- aAGUCCCaCCCCCCCgCcGCCCCCCUc -3'
miRNA:   3'- aUUAGGGaGGGGGGG-GaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 26107 0.77 0.116192
Target:  5'- ----gCCUCCCUCCCCgGCCCCCCUc -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 29185 0.77 0.116192
Target:  5'- ----gCCUCCCUCCCCgGCCCCCCUc -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 23029 0.77 0.116192
Target:  5'- ----gCCUCCCUCCCCgGCCCCCCUc -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 16874 0.77 0.116192
Target:  5'- ----gCCUCCCUCCCCgGCCCCCCUc -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 13796 0.77 0.116192
Target:  5'- ----gCCUCCCUCCCCgGCCCCCCUc -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 170894 0.77 0.116192
Target:  5'- ---cCCCUCaaCCCCCCCU-CCCCCCUg -3'
miRNA:   3'- auuaGGGAG--GGGGGGGAuGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 80704 0.77 0.122078
Target:  5'- --cUCCuCUUCCCCCUCUGCCCCCUg- -3'
miRNA:   3'- auuAGG-GAGGGGGGGGAUGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 22896 0.76 0.128239
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCuCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 16740 0.76 0.128239
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCuCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 25973 0.76 0.128239
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCuCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 19818 0.76 0.128239
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCuCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 29051 0.76 0.128239
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCuCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 13662 0.76 0.128239
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCuCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGG-GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.