miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 5' -64.4 NC_006146.1 + 137076 0.76 0.134688
Target:  5'- ---cCCCUCCCUCCCCcACCCCCgUUg -3'
miRNA:   3'- auuaGGGAGGGGGGGGaUGGGGGgGA- -5'
29004 5' -64.4 NC_006146.1 + 137263 0.76 0.134688
Target:  5'- ---cCCCUCCCUCCCCcACCCCCgUUg -3'
miRNA:   3'- auuaGGGAGGGGGGGGaUGGGGGgGA- -5'
29004 5' -64.4 NC_006146.1 + 18681 0.76 0.138023
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 12524 0.76 0.138023
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 24837 0.76 0.138023
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 21759 0.76 0.138023
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 27915 0.76 0.138023
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 15603 0.76 0.138023
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 167649 0.76 0.138023
Target:  5'- cUGcgCCgUCCCCaggCCCCUAuCCCCCCCUu -3'
miRNA:   3'- -AUuaGGgAGGGG---GGGGAU-GGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 137692 0.76 0.141433
Target:  5'- -cAUCCCggcUCCCCCUCCgGCCUCCCCc -3'
miRNA:   3'- auUAGGG---AGGGGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 5156 0.75 0.163562
Target:  5'- --uUCCCaUCCCCCuCCCUgACCCCCgCUc -3'
miRNA:   3'- auuAGGG-AGGGGG-GGGA-UGGGGGgGA- -5'
29004 5' -64.4 NC_006146.1 + 4218 0.74 0.183893
Target:  5'- ---cCCCgUCUCCCCCCUGCCaggccacaccgcuCCCCCUu -3'
miRNA:   3'- auuaGGG-AGGGGGGGGAUGG-------------GGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 136896 0.74 0.184331
Target:  5'- ---cCCCgacCCCCCCCCUGCCUUCCa- -3'
miRNA:   3'- auuaGGGa--GGGGGGGGAUGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 26248 0.73 0.212297
Target:  5'- --cUCUCUCCCUCCCCgagGCCCCggcUCCUg -3'
miRNA:   3'- auuAGGGAGGGGGGGGa--UGGGG---GGGA- -5'
29004 5' -64.4 NC_006146.1 + 20092 0.73 0.212297
Target:  5'- --cUCUCUCCCUCCCCgagGCCCCggcUCCUg -3'
miRNA:   3'- auuAGGGAGGGGGGGGa--UGGGG---GGGA- -5'
29004 5' -64.4 NC_006146.1 + 17014 0.73 0.212297
Target:  5'- --cUCUCUCCCUCCCCgagGCCCCggcUCCUg -3'
miRNA:   3'- auuAGGGAGGGGGGGGa--UGGGG---GGGA- -5'
29004 5' -64.4 NC_006146.1 + 13937 0.73 0.212297
Target:  5'- --cUCUCUCCCUCCCCgagGCCCCggcUCCUg -3'
miRNA:   3'- auuAGGGAGGGGGGGGa--UGGGG---GGGA- -5'
29004 5' -64.4 NC_006146.1 + 29326 0.73 0.212297
Target:  5'- --cUCUCUCCCUCCCCgagGCCCCggcUCCUg -3'
miRNA:   3'- auuAGGGAGGGGGGGGa--UGGGG---GGGA- -5'
29004 5' -64.4 NC_006146.1 + 23170 0.73 0.212297
Target:  5'- --cUCUCUCCCUCCCCgagGCCCCggcUCCUg -3'
miRNA:   3'- auuAGGGAGGGGGGGGa--UGGGG---GGGA- -5'
29004 5' -64.4 NC_006146.1 + 14183 0.73 0.217299
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.