miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 5' -64.4 NC_006146.1 + 14183 0.73 0.217299
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 17261 0.73 0.217299
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 20339 0.73 0.217299
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 23417 0.73 0.217299
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 29573 0.73 0.217299
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 486 0.73 0.222401
Target:  5'- ---cCCCgcgggaCCCCCCCCU-CCgCCCCCg -3'
miRNA:   3'- auuaGGGa-----GGGGGGGGAuGG-GGGGGa -5'
29004 5' -64.4 NC_006146.1 + 1417 0.73 0.222401
Target:  5'- ---cCCCgcgggaCCCCCCCCU-CCgCCCCCg -3'
miRNA:   3'- auuaGGGa-----GGGGGGGGAuGG-GGGGGa -5'
29004 5' -64.4 NC_006146.1 + 2349 0.73 0.222401
Target:  5'- ---cCCCgcgggaCCCCCCCCU-CCgCCCCCg -3'
miRNA:   3'- auuaGGGa-----GGGGGGGGAuGG-GGGGGa -5'
29004 5' -64.4 NC_006146.1 + 3281 0.73 0.222401
Target:  5'- ---cCCCgcgggaCCCCCCCCU-CCgCCCCCg -3'
miRNA:   3'- auuaGGGa-----GGGGGGGGAuGG-GGGGGa -5'
29004 5' -64.4 NC_006146.1 + 127294 0.72 0.23291
Target:  5'- --cUCCCUCUUCCCCCgACCCgaCCCg -3'
miRNA:   3'- auuAGGGAGGGGGGGGaUGGGg-GGGa -5'
29004 5' -64.4 NC_006146.1 + 26002 0.72 0.243835
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 13691 0.72 0.243835
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 19847 0.72 0.243835
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 16769 0.72 0.243835
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 22925 0.72 0.243835
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 29080 0.72 0.243835
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 3406 0.72 0.261017
Target:  5'- ---gCCCUgCCCCCUCU-CCCCCgCCa -3'
miRNA:   3'- auuaGGGAgGGGGGGGAuGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 611 0.72 0.261017
Target:  5'- ---gCCCUgCCCCCUCU-CCCCCgCCa -3'
miRNA:   3'- auuaGGGAgGGGGGGGAuGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 1542 0.72 0.261017
Target:  5'- ---gCCCUgCCCCCUCU-CCCCCgCCa -3'
miRNA:   3'- auuaGGGAgGGGGGGGAuGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 2474 0.72 0.261017
Target:  5'- ---gCCCUgCCCCCUCU-CCCCCgCCa -3'
miRNA:   3'- auuaGGGAgGGGGGGGAuGGGGG-GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.