miRNA display CGI


Results 61 - 80 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 5' -64.4 NC_006146.1 + 30822 0.71 0.273011
Target:  5'- ---cCUCUUCCaCCCCCUccACCaCCCCCUg -3'
miRNA:   3'- auuaGGGAGGG-GGGGGA--UGG-GGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 130411 0.71 0.285443
Target:  5'- gAGUCCgCUgCCuuucgcggCCCCUCUGCCCCCCUUc -3'
miRNA:   3'- aUUAGG-GA-GG--------GGGGGGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 19952 0.71 0.285443
Target:  5'- ----gCCUCCCUCCCg-GCCCCCCUc -3'
miRNA:   3'- auuagGGAGGGGGGGgaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 137433 0.71 0.285443
Target:  5'- ---cCCCUCCCUUCCCgACCCCCauugCCUu -3'
miRNA:   3'- auuaGGGAGGGGGGGGaUGGGGG----GGA- -5'
29004 5' -64.4 NC_006146.1 + 109064 0.71 0.291825
Target:  5'- gAGUCCCggcaCCagCCCCaCUGCCCCCaCCa -3'
miRNA:   3'- aUUAGGGa---GGg-GGGG-GAUGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 33056 0.7 0.304922
Target:  5'- cAcgCCCaCCCaCCCCgaGCCCCCCUg -3'
miRNA:   3'- aUuaGGGaGGG-GGGGgaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 69211 0.7 0.304922
Target:  5'- --cUCUCUCCCCCCCuCUAgCgCCgCCCg -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAUgG-GG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 125355 0.7 0.311638
Target:  5'- ---gUCUUCCCUCCCCUGCCUggCCCUg -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGG--GGGGa -5'
29004 5' -64.4 NC_006146.1 + 80598 0.7 0.318466
Target:  5'- cUAggCCC-CUCCCCUCUGCCCCUuCCUc -3'
miRNA:   3'- -AUuaGGGaGGGGGGGGAUGGGGG-GGA- -5'
29004 5' -64.4 NC_006146.1 + 125828 0.7 0.318466
Target:  5'- --cUCCCUCUCCCCacgaggcaCCUcaGCCgCCCCUa -3'
miRNA:   3'- auuAGGGAGGGGGG--------GGA--UGGgGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 119318 0.7 0.332456
Target:  5'- ---cCCCUCuggCUCCCCCggGCCCCuCCCg -3'
miRNA:   3'- auuaGGGAG---GGGGGGGa-UGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 131040 0.7 0.332456
Target:  5'- ----gCCUCCUCCCCCgggcacacaGCCCCCgCCg -3'
miRNA:   3'- auuagGGAGGGGGGGGa--------UGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 32516 0.7 0.332456
Target:  5'- gAAUUUCUCCCCCUCCUGgCUCaaCCCUa -3'
miRNA:   3'- aUUAGGGAGGGGGGGGAUgGGG--GGGA- -5'
29004 5' -64.4 NC_006146.1 + 146907 0.7 0.335308
Target:  5'- gAGUUCCUCgcgcguccucuuucgCCCCCUCUccgGCUCCCCCa -3'
miRNA:   3'- aUUAGGGAG---------------GGGGGGGA---UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 797 0.7 0.339619
Target:  5'- ---cCCCgccggCCCCCCCUgcggcgccgGCCCCuCCCg -3'
miRNA:   3'- auuaGGGa----GGGGGGGGa--------UGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 115886 0.7 0.339619
Target:  5'- -cAUCCCgCCCgCCCCC-AUCCCgCCCg -3'
miRNA:   3'- auUAGGGaGGG-GGGGGaUGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 4025 0.7 0.346893
Target:  5'- ---cUCCUCCUCgCCCUccGCuCCCCCCUc -3'
miRNA:   3'- auuaGGGAGGGGgGGGA--UG-GGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 42453 0.7 0.346893
Target:  5'- aGGUCCCg-CUCCCCCU-CCCgCCCg -3'
miRNA:   3'- aUUAGGGagGGGGGGGAuGGGgGGGa -5'
29004 5' -64.4 NC_006146.1 + 119896 0.69 0.354278
Target:  5'- --uUCCCauUCUCCCCCCgugGCgCCCUCUu -3'
miRNA:   3'- auuAGGG--AGGGGGGGGa--UGgGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 42940 0.69 0.354278
Target:  5'- aGGUCCCggUCCCUgCCCU-CCgCCCCg -3'
miRNA:   3'- aUUAGGG--AGGGGgGGGAuGGgGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.