miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 5' -64.4 NC_006146.1 + 137869 0.66 0.523246
Target:  5'- -uGUCCCgggCCCCgCCCCggGCCggcagggggUCCCCg -3'
miRNA:   3'- auUAGGGa--GGGG-GGGGa-UGG---------GGGGGa -5'
29004 5' -64.4 NC_006146.1 + 167053 0.66 0.523246
Target:  5'- gUGGUCCagggcgaCCCCCCUUACCCgCCg- -3'
miRNA:   3'- -AUUAGGgag----GGGGGGGAUGGGgGGga -5'
29004 5' -64.4 NC_006146.1 + 168755 0.66 0.522316
Target:  5'- ---gCCCgCCCCCgggucuuCCCggGCUCCCCCUc -3'
miRNA:   3'- auuaGGGaGGGGG-------GGGa-UGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 170619 0.66 0.522316
Target:  5'- ---gCCCgCCCCCgggucuuCCCggGCUCCCCCUc -3'
miRNA:   3'- auuaGGGaGGGGG-------GGGa-UGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 167823 0.66 0.522316
Target:  5'- ---gCCCgCCCCCgggucuuCCCggGCUCCCCCUc -3'
miRNA:   3'- auuaGGGaGGGGG-------GGGa-UGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 169687 0.66 0.522316
Target:  5'- ---gCCCgCCCCCgggucuuCCCggGCUCCCCCUc -3'
miRNA:   3'- auuaGGGaGGGGG-------GGGa-UGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 111460 0.66 0.513975
Target:  5'- gAGUCCUgCCCCCugCCCUGCgCCUUCg -3'
miRNA:   3'- aUUAGGGaGGGGG--GGGAUGgGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 55934 0.66 0.513975
Target:  5'- --uUCCC-CgCCCUCUCUGCCUCCuCCa -3'
miRNA:   3'- auuAGGGaG-GGGGGGGAUGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 144627 0.67 0.508445
Target:  5'- ---cCCCUCCaCCCaggcuaauuccgccaCCCgUGCCCCCaCCUc -3'
miRNA:   3'- auuaGGGAGG-GGG---------------GGG-AUGGGGG-GGA- -5'
29004 5' -64.4 NC_006146.1 + 75939 0.67 0.504772
Target:  5'- uUAAUgCCUggcugcacaCCCCCCUCUACCgcagcggccacgUCCCCUg -3'
miRNA:   3'- -AUUAgGGA---------GGGGGGGGAUGG------------GGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 120166 0.67 0.504772
Target:  5'- ---cCCCUUCCCgacgCCCCgucGCCCCCgCUc -3'
miRNA:   3'- auuaGGGAGGGG----GGGGa--UGGGGGgGA- -5'
29004 5' -64.4 NC_006146.1 + 126775 0.67 0.504772
Target:  5'- cAcgUCCUgCCCCCCCU-CCUCgCCg -3'
miRNA:   3'- aUuaGGGAgGGGGGGGAuGGGGgGGa -5'
29004 5' -64.4 NC_006146.1 + 156093 0.67 0.504772
Target:  5'- ---gCCCUCCUCCggCCCggccgGCCUCUCCUu -3'
miRNA:   3'- auuaGGGAGGGGG--GGGa----UGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 128350 0.67 0.504772
Target:  5'- gAAUUCagcgCCCCCCCa---CCCCCCg -3'
miRNA:   3'- aUUAGGga--GGGGGGGgaugGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 133224 0.67 0.495641
Target:  5'- --cUCCUUgCCUcguugCCCCCaGCCCCCCUa -3'
miRNA:   3'- auuAGGGA-GGG-----GGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 96178 0.67 0.495641
Target:  5'- gGGUCCCUCCagggCCUuucuggCCCUgagcguaaGCCCCCCUg -3'
miRNA:   3'- aUUAGGGAGG----GGG------GGGA--------UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 21315 0.67 0.495641
Target:  5'- ----gCCUCCUCUCCC-GCCgCCCCUu -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGgGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 156867 0.67 0.495641
Target:  5'- uUGcgCCUgCCCCCgCCUGCUCCCUg- -3'
miRNA:   3'- -AUuaGGGaGGGGGgGGAUGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 155614 0.67 0.495641
Target:  5'- ---cCCCUCCUCCCCCU-CgCUCCg- -3'
miRNA:   3'- auuaGGGAGGGGGGGGAuGgGGGGga -5'
29004 5' -64.4 NC_006146.1 + 9128 0.67 0.486586
Target:  5'- aGAUUCaggCCCCCgCCCaggcGCCCCCUCg -3'
miRNA:   3'- aUUAGGga-GGGGG-GGGa---UGGGGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.