miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 5' -64.4 NC_006146.1 + 141551 0.67 0.486586
Target:  5'- ----gCCUCaCCCCUCaGCCCCCUCUg -3'
miRNA:   3'- auuagGGAGgGGGGGGaUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 149484 0.67 0.485685
Target:  5'- -----gCUCCCCCauggggaCCCUGCCCUCUCUg -3'
miRNA:   3'- auuaggGAGGGGG-------GGGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 144711 0.67 0.477609
Target:  5'- --uUCCCaggccgCCCCCUCCgaccuaauCCCCUCCa -3'
miRNA:   3'- auuAGGGa-----GGGGGGGGau------GGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 63804 0.67 0.477609
Target:  5'- ---cCCCUUCCCagaCCCacccACUCCCCCg -3'
miRNA:   3'- auuaGGGAGGGGg--GGGa---UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 14372 0.67 0.468716
Target:  5'- gGGUCCCgggaucucgCCUCCCgCU-CCCCUCCg -3'
miRNA:   3'- aUUAGGGa--------GGGGGGgGAuGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 14071 0.67 0.468716
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCUCCc -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 17149 0.67 0.468716
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCUCCc -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 23305 0.67 0.468716
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCUCCc -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 20227 0.67 0.468716
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCUCCc -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 26383 0.67 0.468716
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCUCCc -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 29461 0.67 0.468716
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCUCCc -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 109220 0.67 0.468716
Target:  5'- cGGUCCCcaacccgugCCCCCCUCUcuCCaCCUCCUg -3'
miRNA:   3'- aUUAGGGa--------GGGGGGGGAu-GG-GGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 162990 0.67 0.468716
Target:  5'- gGGUCCC-CCUUCUCCUcgGCCUCCUCUu -3'
miRNA:   3'- aUUAGGGaGGGGGGGGA--UGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 129841 0.67 0.468716
Target:  5'- --cUCCCUCCa-CCCCgagGCCCCCa-- -3'
miRNA:   3'- auuAGGGAGGggGGGGa--UGGGGGgga -5'
29004 5' -64.4 NC_006146.1 + 76999 0.67 0.459907
Target:  5'- ----gCCUCCgugcuggcCCCCCCUGCcgcaaauuccgCCCCCCUu -3'
miRNA:   3'- auuagGGAGG--------GGGGGGAUG-----------GGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 110780 0.67 0.459907
Target:  5'- aGGUCCCUCCCCcggCCCCUugCacagaaCgCCa -3'
miRNA:   3'- aUUAGGGAGGGG---GGGGAugGg-----GgGGa -5'
29004 5' -64.4 NC_006146.1 + 127816 0.68 0.451188
Target:  5'- -uGUCCUgaaaaUCCgCCUCCaGCCUCCCCUg -3'
miRNA:   3'- auUAGGG-----AGGgGGGGGaUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 122891 0.68 0.451188
Target:  5'- -cGUgCCUCCCCCgCCaAgCCUCCCg -3'
miRNA:   3'- auUAgGGAGGGGGgGGaUgGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 31528 0.68 0.446
Target:  5'- --uUCuCCUacuaaacagcaggcaCCCCCCCCggcGCCgCCCCUa -3'
miRNA:   3'- auuAG-GGA---------------GGGGGGGGa--UGGgGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 23924 0.68 0.437428
Target:  5'- uUGcgCCCagCCCCUCCUGCCCCaagggcggcgacuuuCCCc -3'
miRNA:   3'- -AUuaGGGagGGGGGGGAUGGGG---------------GGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.