miRNA display CGI


Results 61 - 80 of 182 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 5' -64.4 NC_006146.1 + 119070 0.68 0.434025
Target:  5'- ---cCCCgagCCCCCCUCcacGCCgCCCCg -3'
miRNA:   3'- auuaGGGa--GGGGGGGGa--UGGgGGGGa -5'
29004 5' -64.4 NC_006146.1 + 2236 0.68 0.434025
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 80815 0.68 0.434025
Target:  5'- --cUCCgCUgCCUCCaCUGCUCCCCCUg -3'
miRNA:   3'- auuAGG-GAgGGGGGgGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 373 0.68 0.434025
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCgCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 1304 0.68 0.434025
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 3168 0.68 0.434025
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 42034 0.68 0.433177
Target:  5'- ----gCCUCCgCCCCCUcuucgugGCCCUUCCUg -3'
miRNA:   3'- auuagGGAGGgGGGGGA-------UGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 151972 0.68 0.425588
Target:  5'- ---gCCCUUCCCgUCCUcguuACCCCCCa- -3'
miRNA:   3'- auuaGGGAGGGGgGGGA----UGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 119220 0.68 0.425588
Target:  5'- cGAUCagcCCCCgCCCCgucGCCCCCCUUc -3'
miRNA:   3'- aUUAGggaGGGG-GGGGa--UGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 125549 0.68 0.425588
Target:  5'- ---aCCCUCCUCCCguuggguaCCgGCCuCCCCCg -3'
miRNA:   3'- auuaGGGAGGGGGG--------GGaUGG-GGGGGa -5'
29004 5' -64.4 NC_006146.1 + 123160 0.68 0.425588
Target:  5'- -cGUCCCcagggccagCCCCUCCaagACCUCCCCa -3'
miRNA:   3'- auUAGGGa--------GGGGGGGga-UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 33853 0.68 0.423911
Target:  5'- gUGGUCCCcggaaccccaggCCCCCaCCCggccuCCUCCCCg -3'
miRNA:   3'- -AUUAGGGa-----------GGGGG-GGGau---GGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 33666 0.68 0.423911
Target:  5'- gUGGUCCCcgggaccccaggCCCCCaCCCggcuuCCUCCCCg -3'
miRNA:   3'- -AUUAGGGa-----------GGGGG-GGGau---GGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 31264 0.68 0.417248
Target:  5'- ----gCCUCCUCCUCCUcaacacauGCCuCCCCCa -3'
miRNA:   3'- auuagGGAGGGGGGGGA--------UGG-GGGGGa -5'
29004 5' -64.4 NC_006146.1 + 54567 0.68 0.409009
Target:  5'- -cGUCCCUUCgCCgCCUuCCCCCuCCUc -3'
miRNA:   3'- auUAGGGAGGgGGgGGAuGGGGG-GGA- -5'
29004 5' -64.4 NC_006146.1 + 70629 0.68 0.400872
Target:  5'- --cUgCCUCCgCCCCaUUGCCCCCaCCa -3'
miRNA:   3'- auuAgGGAGGgGGGG-GAUGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 20170 0.68 0.400872
Target:  5'- aGAUCCCUCgCCUCUUUGCagagggCCCCCg -3'
miRNA:   3'- aUUAGGGAGgGGGGGGAUGg-----GGGGGa -5'
29004 5' -64.4 NC_006146.1 + 51915 0.68 0.400872
Target:  5'- --cUUCCUCCCCCCa--GCUCCUCCUu -3'
miRNA:   3'- auuAGGGAGGGGGGggaUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 168156 0.69 0.392839
Target:  5'- ---gCCUUCCCCCgUCUGCUCCCgCg -3'
miRNA:   3'- auuaGGGAGGGGGgGGAUGGGGGgGa -5'
29004 5' -64.4 NC_006146.1 + 167224 0.69 0.392839
Target:  5'- ---gCCUUCCCCCgUCUGCUCCCgCg -3'
miRNA:   3'- auuaGGGAGGGGGgGGAUGGGGGgGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.