miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 5' -64.4 NC_006146.1 + 373 0.68 0.434025
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCgCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 486 0.73 0.222401
Target:  5'- ---cCCCgcgggaCCCCCCCCU-CCgCCCCCg -3'
miRNA:   3'- auuaGGGa-----GGGGGGGGAuGG-GGGGGa -5'
29004 5' -64.4 NC_006146.1 + 611 0.72 0.261017
Target:  5'- ---gCCCUgCCCCCUCU-CCCCCgCCa -3'
miRNA:   3'- auuaGGGAgGGGGGGGAuGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 719 0.69 0.369377
Target:  5'- ---cCCCggCCCCgCCCUcgggaGCCCCCUCa -3'
miRNA:   3'- auuaGGGa-GGGGgGGGA-----UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 797 0.7 0.339619
Target:  5'- ---cCCCgccggCCCCCCCUgcggcgccgGCCCCuCCCg -3'
miRNA:   3'- auuaGGGa----GGGGGGGGa--------UGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 1155 0.69 0.392839
Target:  5'- gGGUCCCcgggCCgCCCCgggGCUCCCCCg -3'
miRNA:   3'- aUUAGGGa---GGgGGGGga-UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 1304 0.68 0.434025
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 1417 0.73 0.222401
Target:  5'- ---cCCCgcgggaCCCCCCCCU-CCgCCCCCg -3'
miRNA:   3'- auuaGGGa-----GGGGGGGGAuGG-GGGGGa -5'
29004 5' -64.4 NC_006146.1 + 1542 0.72 0.261017
Target:  5'- ---gCCCUgCCCCCUCU-CCCCCgCCa -3'
miRNA:   3'- auuaGGGAgGGGGGGGAuGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 1650 0.69 0.369377
Target:  5'- ---cCCCggCCCCgCCCUcgggaGCCCCCUCa -3'
miRNA:   3'- auuaGGGa-GGGGgGGGA-----UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 1728 0.69 0.369377
Target:  5'- ---cCCCgccggCCCCCCCUgcaggcgccgGCCCCuCCCg -3'
miRNA:   3'- auuaGGGa----GGGGGGGGa---------UGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 2087 0.69 0.392839
Target:  5'- gGGUCCCcgggCCgCCCCgggGCUCCCCCg -3'
miRNA:   3'- aUUAGGGa---GGgGGGGga-UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 2236 0.68 0.434025
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 2349 0.73 0.222401
Target:  5'- ---cCCCgcgggaCCCCCCCCU-CCgCCCCCg -3'
miRNA:   3'- auuaGGGa-----GGGGGGGGAuGG-GGGGGa -5'
29004 5' -64.4 NC_006146.1 + 2474 0.72 0.261017
Target:  5'- ---gCCCUgCCCCCUCU-CCCCCgCCa -3'
miRNA:   3'- auuaGGGAgGGGGGGGAuGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 2582 0.69 0.369377
Target:  5'- ---cCCCggCCCCgCCCUcgggaGCCCCCUCa -3'
miRNA:   3'- auuaGGGa-GGGGgGGGA-----UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 2660 0.69 0.369377
Target:  5'- ---cCCCgccggCCCCCCCUgcaggcgccgGCCCCuCCCg -3'
miRNA:   3'- auuaGGGa----GGGGGGGGa---------UGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 3019 0.69 0.392839
Target:  5'- gGGUCCCcgggCCgCCCCgggGCUCCCCCg -3'
miRNA:   3'- aUUAGGGa---GGgGGGGga-UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 3168 0.68 0.434025
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 3281 0.73 0.222401
Target:  5'- ---cCCCgcgggaCCCCCCCCU-CCgCCCCCg -3'
miRNA:   3'- auuaGGGa-----GGGGGGGGAuGG-GGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.