miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 5' -64.4 NC_006146.1 + 3406 0.72 0.261017
Target:  5'- ---gCCCUgCCCCCUCU-CCCCCgCCa -3'
miRNA:   3'- auuaGGGAgGGGGGGGAuGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 3514 0.69 0.369377
Target:  5'- ---cCCCggCCCCgCCCUcgggaGCCCCCUCa -3'
miRNA:   3'- auuaGGGa-GGGGgGGGA-----UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 3592 0.69 0.369377
Target:  5'- ---cCCCgccggCCCCCCCUgcaggcgccgGCCCCuCCCg -3'
miRNA:   3'- auuaGGGa----GGGGGGGGa---------UGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 3940 0.69 0.392839
Target:  5'- -cGUCCUcuauUUCCCCUCCUcaugcagcagcACUCCCCCUg -3'
miRNA:   3'- auUAGGG----AGGGGGGGGA-----------UGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 4025 0.7 0.346893
Target:  5'- ---cUCCUCCUCgCCCUccGCuCCCCCCUc -3'
miRNA:   3'- auuaGGGAGGGGgGGGA--UG-GGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 4218 0.74 0.183893
Target:  5'- ---cCCCgUCUCCCCCCUGCCaggccacaccgcuCCCCCUu -3'
miRNA:   3'- auuaGGG-AGGGGGGGGAUGG-------------GGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 4769 0.81 0.0545
Target:  5'- gAGUCCCUCCCCCUCCgucUCCUCCCUg -3'
miRNA:   3'- aUUAGGGAGGGGGGGGau-GGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 4912 0.66 0.560918
Target:  5'- -cAUCCCUaCUCUuuggaUCCCUGCUCCUCCUc -3'
miRNA:   3'- auUAGGGA-GGGG-----GGGGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 5156 0.75 0.163562
Target:  5'- --uUCCCaUCCCCCuCCCUgACCCCCgCUc -3'
miRNA:   3'- auuAGGG-AGGGGG-GGGA-UGGGGGgGA- -5'
29004 5' -64.4 NC_006146.1 + 9128 0.67 0.486586
Target:  5'- aGAUUCaggCCCCCgCCCaggcGCCCCCUCg -3'
miRNA:   3'- aUUAGGga-GGGGG-GGGa---UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 12524 0.76 0.138023
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 13662 0.76 0.128239
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCuCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 13691 0.72 0.243835
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 13796 0.77 0.116192
Target:  5'- ----gCCUCCCUCCCCgGCCCCCCUc -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 13937 0.73 0.212297
Target:  5'- --cUCUCUCCCUCCCCgagGCCCCggcUCCUg -3'
miRNA:   3'- auuAGGGAGGGGGGGGa--UGGGG---GGGA- -5'
29004 5' -64.4 NC_006146.1 + 14071 0.67 0.468716
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCUCCc -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 14183 0.73 0.217299
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 14372 0.67 0.468716
Target:  5'- gGGUCCCgggaucucgCCUCCCgCU-CCCCUCCg -3'
miRNA:   3'- aUUAGGGa--------GGGGGGgGAuGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 15603 0.76 0.138023
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 16740 0.76 0.128239
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCuCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGG-GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.