miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 5' -64.4 NC_006146.1 + 16769 0.72 0.243835
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 16874 0.77 0.116192
Target:  5'- ----gCCUCCCUCCCCgGCCCCCCUc -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 17014 0.73 0.212297
Target:  5'- --cUCUCUCCCUCCCCgagGCCCCggcUCCUg -3'
miRNA:   3'- auuAGGGAGGGGGGGGa--UGGGG---GGGA- -5'
29004 5' -64.4 NC_006146.1 + 17149 0.67 0.468716
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCUCCc -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 17261 0.73 0.217299
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 18681 0.76 0.138023
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 19818 0.76 0.128239
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCuCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 19847 0.72 0.243835
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 19952 0.71 0.285443
Target:  5'- ----gCCUCCCUCCCg-GCCCCCCUc -3'
miRNA:   3'- auuagGGAGGGGGGGgaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 20092 0.73 0.212297
Target:  5'- --cUCUCUCCCUCCCCgagGCCCCggcUCCUg -3'
miRNA:   3'- auuAGGGAGGGGGGGGa--UGGGG---GGGA- -5'
29004 5' -64.4 NC_006146.1 + 20170 0.68 0.400872
Target:  5'- aGAUCCCUCgCCUCUUUGCagagggCCCCCg -3'
miRNA:   3'- aUUAGGGAGgGGGGGGAUGg-----GGGGGa -5'
29004 5' -64.4 NC_006146.1 + 20227 0.67 0.468716
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCUCCc -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 20339 0.73 0.217299
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 21315 0.67 0.495641
Target:  5'- ----gCCUCCUCUCCC-GCCgCCCCUu -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGgGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 21759 0.76 0.138023
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 22896 0.76 0.128239
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCuCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 22925 0.72 0.243835
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 23029 0.77 0.116192
Target:  5'- ----gCCUCCCUCCCCgGCCCCCCUc -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 23170 0.73 0.212297
Target:  5'- --cUCUCUCCCUCCCCgagGCCCCggcUCCUg -3'
miRNA:   3'- auuAGGGAGGGGGGGGa--UGGGG---GGGA- -5'
29004 5' -64.4 NC_006146.1 + 23305 0.67 0.468716
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCUCCc -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.