miRNA display CGI


Results 61 - 80 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 5' -64.4 NC_006146.1 + 23417 0.73 0.217299
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 23924 0.68 0.437428
Target:  5'- uUGcgCCCagCCCCUCCUGCCCCaagggcggcgacuuuCCCc -3'
miRNA:   3'- -AUuaGGGagGGGGGGGAUGGGG---------------GGGa -5'
29004 5' -64.4 NC_006146.1 + 24837 0.76 0.138023
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 25973 0.76 0.128239
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCuCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 26002 0.72 0.243835
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 26107 0.77 0.116192
Target:  5'- ----gCCUCCCUCCCCgGCCCCCCUc -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 26248 0.73 0.212297
Target:  5'- --cUCUCUCCCUCCCCgagGCCCCggcUCCUg -3'
miRNA:   3'- auuAGGGAGGGGGGGGa--UGGGG---GGGA- -5'
29004 5' -64.4 NC_006146.1 + 26383 0.67 0.468716
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCUCCc -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 26495 0.73 0.217299
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 27915 0.76 0.138023
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 27936 0.66 0.541974
Target:  5'- --nUCCCUCUcguCCUCCCcGCCUCuCCCa -3'
miRNA:   3'- auuAGGGAGG---GGGGGGaUGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 28928 0.66 0.560918
Target:  5'- ---aCCCgagcagCCCCgCCCC-GCCCgCCCg -3'
miRNA:   3'- auuaGGGa-----GGGG-GGGGaUGGGgGGGa -5'
29004 5' -64.4 NC_006146.1 + 29051 0.76 0.128239
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCuCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 29080 0.72 0.243835
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 29185 0.77 0.116192
Target:  5'- ----gCCUCCCUCCCCgGCCCCCCUc -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 29326 0.73 0.212297
Target:  5'- --cUCUCUCCCUCCCCgagGCCCCggcUCCUg -3'
miRNA:   3'- auuAGGGAGGGGGGGGa--UGGGG---GGGA- -5'
29004 5' -64.4 NC_006146.1 + 29461 0.67 0.468716
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCUCCc -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 29573 0.73 0.217299
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 30822 0.71 0.273011
Target:  5'- ---cCUCUUCCaCCCCCUccACCaCCCCCUg -3'
miRNA:   3'- auuaGGGAGGG-GGGGGA--UGG-GGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 31264 0.68 0.417248
Target:  5'- ----gCCUCCUCCUCCUcaacacauGCCuCCCCCa -3'
miRNA:   3'- auuagGGAGGGGGGGGA--------UGG-GGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.