miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 5' -64.4 NC_006146.1 + 170894 0.77 0.116192
Target:  5'- ---cCCCUCaaCCCCCCCU-CCCCCCUg -3'
miRNA:   3'- auuaGGGAG--GGGGGGGAuGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 170619 0.66 0.522316
Target:  5'- ---gCCCgCCCCCgggucuuCCCggGCUCCCCCUc -3'
miRNA:   3'- auuaGGGaGGGGG-------GGGa-UGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 170020 0.69 0.392839
Target:  5'- ---gCCUUCCCCCgUCUGCUCCCgCg -3'
miRNA:   3'- auuaGGGAGGGGGgGGAUGGGGGgGa -5'
29004 5' -64.4 NC_006146.1 + 169687 0.66 0.522316
Target:  5'- ---gCCCgCCCCCgggucuuCCCggGCUCCCCCUc -3'
miRNA:   3'- auuaGGGaGGGGG-------GGGa-UGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 169088 0.69 0.392839
Target:  5'- ---gCCUUCCCCCgUCUGCUCCCgCg -3'
miRNA:   3'- auuaGGGAGGGGGgGGAUGGGGGgGa -5'
29004 5' -64.4 NC_006146.1 + 168755 0.66 0.522316
Target:  5'- ---gCCCgCCCCCgggucuuCCCggGCUCCCCCUc -3'
miRNA:   3'- auuaGGGaGGGGG-------GGGa-UGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 168156 0.69 0.392839
Target:  5'- ---gCCUUCCCCCgUCUGCUCCCgCg -3'
miRNA:   3'- auuaGGGAGGGGGgGGAUGGGGGgGa -5'
29004 5' -64.4 NC_006146.1 + 167823 0.66 0.522316
Target:  5'- ---gCCCgCCCCCgggucuuCCCggGCUCCCCCUc -3'
miRNA:   3'- auuaGGGaGGGGG-------GGGa-UGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 167649 0.76 0.138023
Target:  5'- cUGcgCCgUCCCCaggCCCCUAuCCCCCCCUu -3'
miRNA:   3'- -AUuaGGgAGGGG---GGGGAU-GGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 167224 0.69 0.392839
Target:  5'- ---gCCUUCCCCCgUCUGCUCCCgCg -3'
miRNA:   3'- auuaGGGAGGGGGgGGAUGGGGGgGa -5'
29004 5' -64.4 NC_006146.1 + 167123 0.78 0.092847
Target:  5'- ---cCCCcCCCCCCCCccCCCCCCCg -3'
miRNA:   3'- auuaGGGaGGGGGGGGauGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 167053 0.66 0.523246
Target:  5'- gUGGUCCagggcgaCCCCCCUUACCCgCCg- -3'
miRNA:   3'- -AUUAGGgag----GGGGGGGAUGGGgGGga -5'
29004 5' -64.4 NC_006146.1 + 166036 0.69 0.354278
Target:  5'- gGGUgCCUguggcCCCCgCCCCUGCCCcuauuCCCCUc -3'
miRNA:   3'- aUUAgGGA-----GGGG-GGGGAUGGG-----GGGGA- -5'
29004 5' -64.4 NC_006146.1 + 162990 0.67 0.468716
Target:  5'- gGGUCCC-CCUUCUCCUcgGCCUCCUCUu -3'
miRNA:   3'- aUUAGGGaGGGGGGGGA--UGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 162647 0.79 0.079831
Target:  5'- --cUCCCUCCCCCuCCCUACUCUCCa- -3'
miRNA:   3'- auuAGGGAGGGGG-GGGAUGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 159087 0.69 0.354278
Target:  5'- gGGUCCCaccUUCCCCUCCUGCagggUCCCCa -3'
miRNA:   3'- aUUAGGG---AGGGGGGGGAUGg---GGGGGa -5'
29004 5' -64.4 NC_006146.1 + 156867 0.67 0.495641
Target:  5'- uUGcgCCUgCCCCCgCCUGCUCCCUg- -3'
miRNA:   3'- -AUuaGGGaGGGGGgGGAUGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 156093 0.67 0.504772
Target:  5'- ---gCCCUCCUCCggCCCggccgGCCUCUCCUu -3'
miRNA:   3'- auuaGGGAGGGGG--GGGa----UGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 155614 0.67 0.495641
Target:  5'- ---cCCCUCCUCCCCCU-CgCUCCg- -3'
miRNA:   3'- auuaGGGAGGGGGGGGAuGgGGGGga -5'
29004 5' -64.4 NC_006146.1 + 151972 0.68 0.425588
Target:  5'- ---gCCCUUCCCgUCCUcguuACCCCCCa- -3'
miRNA:   3'- auuaGGGAGGGGgGGGA----UGGGGGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.