miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 5' -64.4 NC_006146.1 + 150688 0.66 0.557114
Target:  5'- gAAUCCUgcaccaguacaugCCCagCCUCCUGCgCCCCCg -3'
miRNA:   3'- aUUAGGGa------------GGG--GGGGGAUGgGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 149484 0.67 0.485685
Target:  5'- -----gCUCCCCCauggggaCCCUGCCCUCUCUg -3'
miRNA:   3'- auuaggGAGGGGG-------GGGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 149311 0.69 0.384911
Target:  5'- --uUUUCUUgCCCCCUUGauCCCCCCCUu -3'
miRNA:   3'- auuAGGGAGgGGGGGGAU--GGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 148900 0.66 0.541974
Target:  5'- cAAUCCCUuggggucuugCCCUCCaCCaGCUUCCCCg -3'
miRNA:   3'- aUUAGGGA----------GGGGGG-GGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 146907 0.7 0.335308
Target:  5'- gAGUUCCUCgcgcguccucuuucgCCCCCUCUccgGCUCCCCCa -3'
miRNA:   3'- aUUAGGGAG---------------GGGGGGGA---UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 144711 0.67 0.477609
Target:  5'- --uUCCCaggccgCCCCCUCCgaccuaauCCCCUCCa -3'
miRNA:   3'- auuAGGGa-----GGGGGGGGau------GGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 144627 0.67 0.508445
Target:  5'- ---cCCCUCCaCCCaggcuaauuccgccaCCCgUGCCCCCaCCUc -3'
miRNA:   3'- auuaGGGAGG-GGG---------------GGG-AUGGGGG-GGA- -5'
29004 5' -64.4 NC_006146.1 + 141551 0.67 0.486586
Target:  5'- ----gCCUCaCCCCUCaGCCCCCUCUg -3'
miRNA:   3'- auuagGGAGgGGGGGGaUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 138721 0.93 0.008597
Target:  5'- ---aUCCUCCCCCCCCUACCCCCCCc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 137869 0.66 0.523246
Target:  5'- -uGUCCCgggCCCCgCCCCggGCCggcagggggUCCCCg -3'
miRNA:   3'- auUAGGGa--GGGG-GGGGa-UGG---------GGGGGa -5'
29004 5' -64.4 NC_006146.1 + 137692 0.76 0.141433
Target:  5'- -cAUCCCggcUCCCCCUCCgGCCUCCCCc -3'
miRNA:   3'- auUAGGG---AGGGGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 137433 0.71 0.285443
Target:  5'- ---cCCCUCCCUUCCCgACCCCCauugCCUu -3'
miRNA:   3'- auuaGGGAGGGGGGGGaUGGGGG----GGA- -5'
29004 5' -64.4 NC_006146.1 + 137263 0.76 0.134688
Target:  5'- ---cCCCUCCCUCCCCcACCCCCgUUg -3'
miRNA:   3'- auuaGGGAGGGGGGGGaUGGGGGgGA- -5'
29004 5' -64.4 NC_006146.1 + 137076 0.76 0.134688
Target:  5'- ---cCCCUCCCUCCCCcACCCCCgUUg -3'
miRNA:   3'- auuaGGGAGGGGGGGGaUGGGGGgGA- -5'
29004 5' -64.4 NC_006146.1 + 136896 0.74 0.184331
Target:  5'- ---cCCCgacCCCCCCCCUGCCUUCCa- -3'
miRNA:   3'- auuaGGGa--GGGGGGGGAUGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 133224 0.67 0.495641
Target:  5'- --cUCCUUgCCUcguugCCCCCaGCCCCCCUa -3'
miRNA:   3'- auuAGGGA-GGG-----GGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 131040 0.7 0.332456
Target:  5'- ----gCCUCCUCCCCCgggcacacaGCCCCCgCCg -3'
miRNA:   3'- auuagGGAGGGGGGGGa--------UGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 130411 0.71 0.285443
Target:  5'- gAGUCCgCUgCCuuucgcggCCCCUCUGCCCCCCUUc -3'
miRNA:   3'- aUUAGG-GA-GG--------GGGGGGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 130059 0.66 0.541974
Target:  5'- ----gCCUCCaagagcgCCCCCUGCCCCUuaCCa -3'
miRNA:   3'- auuagGGAGGg------GGGGGAUGGGGG--GGa -5'
29004 5' -64.4 NC_006146.1 + 129841 0.67 0.468716
Target:  5'- --cUCCCUCCa-CCCCgagGCCCCCa-- -3'
miRNA:   3'- auuAGGGAGGggGGGGa--UGGGGGgga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.