miRNA display CGI


Results 41 - 60 of 182 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 5' -64.4 NC_006146.1 + 128350 0.67 0.504772
Target:  5'- gAAUUCagcgCCCCCCCa---CCCCCCg -3'
miRNA:   3'- aUUAGGga--GGGGGGGgaugGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 127816 0.68 0.451188
Target:  5'- -uGUCCUgaaaaUCCgCCUCCaGCCUCCCCUg -3'
miRNA:   3'- auUAGGG-----AGGgGGGGGaUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 127294 0.72 0.23291
Target:  5'- --cUCCCUCUUCCCCCgACCCgaCCCg -3'
miRNA:   3'- auuAGGGAGGGGGGGGaUGGGg-GGGa -5'
29004 5' -64.4 NC_006146.1 + 126883 0.66 0.541974
Target:  5'- ---gCCCUCggCCgCCCCCU-CCCCgCCg -3'
miRNA:   3'- auuaGGGAG--GG-GGGGGAuGGGGgGGa -5'
29004 5' -64.4 NC_006146.1 + 126775 0.67 0.504772
Target:  5'- cAcgUCCUgCCCCCCCU-CCUCgCCg -3'
miRNA:   3'- aUuaGGGAgGGGGGGGAuGGGGgGGa -5'
29004 5' -64.4 NC_006146.1 + 125828 0.7 0.318466
Target:  5'- --cUCCCUCUCCCCacgaggcaCCUcaGCCgCCCCUa -3'
miRNA:   3'- auuAGGGAGGGGGG--------GGA--UGGgGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 125549 0.68 0.425588
Target:  5'- ---aCCCUCCUCCCguuggguaCCgGCCuCCCCCg -3'
miRNA:   3'- auuaGGGAGGGGGG--------GGaUGG-GGGGGa -5'
29004 5' -64.4 NC_006146.1 + 125355 0.7 0.311638
Target:  5'- ---gUCUUCCCUCCCCUGCCUggCCCUg -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGG--GGGGa -5'
29004 5' -64.4 NC_006146.1 + 123160 0.68 0.425588
Target:  5'- -cGUCCCcagggccagCCCCUCCaagACCUCCCCa -3'
miRNA:   3'- auUAGGGa--------GGGGGGGga-UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 122891 0.68 0.451188
Target:  5'- -cGUgCCUCCCCCgCCaAgCCUCCCg -3'
miRNA:   3'- auUAgGGAGGGGGgGGaUgGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 120166 0.67 0.504772
Target:  5'- ---cCCCUUCCCgacgCCCCgucGCCCCCgCUc -3'
miRNA:   3'- auuaGGGAGGGG----GGGGa--UGGGGGgGA- -5'
29004 5' -64.4 NC_006146.1 + 119896 0.69 0.354278
Target:  5'- --uUCCCauUCUCCCCCCgugGCgCCCUCUu -3'
miRNA:   3'- auuAGGG--AGGGGGGGGa--UGgGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 119320 0.66 0.53258
Target:  5'- ----gCCUCaguCCCCCCUucggccgcgccGCCUCCCCa -3'
miRNA:   3'- auuagGGAGg--GGGGGGA-----------UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 119318 0.7 0.332456
Target:  5'- ---cCCCUCuggCUCCCCCggGCCCCuCCCg -3'
miRNA:   3'- auuaGGGAG---GGGGGGGa-UGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 119220 0.68 0.425588
Target:  5'- cGAUCagcCCCCgCCCCgucGCCCCCCUUc -3'
miRNA:   3'- aUUAGggaGGGG-GGGGa--UGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 119070 0.68 0.434025
Target:  5'- ---cCCCgagCCCCCCUCcacGCCgCCCCg -3'
miRNA:   3'- auuaGGGa--GGGGGGGGa--UGGgGGGGa -5'
29004 5' -64.4 NC_006146.1 + 115886 0.7 0.339619
Target:  5'- -cAUCCCgCCCgCCCCC-AUCCCgCCCg -3'
miRNA:   3'- auUAGGGaGGG-GGGGGaUGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 111460 0.66 0.513975
Target:  5'- gAGUCCUgCCCCCugCCCUGCgCCUUCg -3'
miRNA:   3'- aUUAGGGaGGGGG--GGGAUGgGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 110780 0.67 0.459907
Target:  5'- aGGUCCCUCCCCcggCCCCUugCacagaaCgCCa -3'
miRNA:   3'- aUUAGGGAGGGG---GGGGAugGg-----GgGGa -5'
29004 5' -64.4 NC_006146.1 + 109220 0.67 0.468716
Target:  5'- cGGUCCCcaacccgugCCCCCCUCUcuCCaCCUCCUg -3'
miRNA:   3'- aUUAGGGa--------GGGGGGGGAu-GG-GGGGGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.