miRNA display CGI


Results 61 - 80 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 5' -64.4 NC_006146.1 + 13691 0.72 0.243835
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 22925 0.72 0.243835
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGga -5'
29004 5' -64.4 NC_006146.1 + 21759 0.76 0.138023
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 137692 0.76 0.141433
Target:  5'- -cAUCCCggcUCCCCCUCCgGCCUCCCCc -3'
miRNA:   3'- auUAGGG---AGGGGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 20092 0.73 0.212297
Target:  5'- --cUCUCUCCCUCCCCgagGCCCCggcUCCUg -3'
miRNA:   3'- auuAGGGAGGGGGGGGa--UGGGG---GGGA- -5'
29004 5' -64.4 NC_006146.1 + 23170 0.73 0.212297
Target:  5'- --cUCUCUCCCUCCCCgagGCCCCggcUCCUg -3'
miRNA:   3'- auuAGGGAGGGGGGGGa--UGGGG---GGGA- -5'
29004 5' -64.4 NC_006146.1 + 14183 0.73 0.217299
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 17261 0.73 0.217299
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 23417 0.73 0.217299
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 26495 0.73 0.217299
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 26383 0.67 0.468716
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCUCCc -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 17149 0.67 0.468716
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCUCCc -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 19952 0.71 0.285443
Target:  5'- ----gCCUCCCUCCCg-GCCCCCCUc -3'
miRNA:   3'- auuagGGAGGGGGGGgaUGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 69211 0.7 0.304922
Target:  5'- --cUCUCUCCCCCCCuCUAgCgCCgCCCg -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAUgG-GG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 119896 0.69 0.354278
Target:  5'- --uUCCCauUCUCCCCCCgugGCgCCCUCUu -3'
miRNA:   3'- auuAGGG--AGGGGGGGGa--UGgGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 159087 0.69 0.354278
Target:  5'- gGGUCCCaccUUCCCCUCCUGCagggUCCCCa -3'
miRNA:   3'- aUUAGGG---AGGGGGGGGAUGg---GGGGGa -5'
29004 5' -64.4 NC_006146.1 + 94521 0.69 0.384911
Target:  5'- cGGUCCCUCCCCCggCgcGCCCUCUCg -3'
miRNA:   3'- aUUAGGGAGGGGGggGa-UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 169088 0.69 0.392839
Target:  5'- ---gCCUUCCCCCgUCUGCUCCCgCg -3'
miRNA:   3'- auuaGGGAGGGGGgGGAUGGGGGgGa -5'
29004 5' -64.4 NC_006146.1 + 33666 0.68 0.423911
Target:  5'- gUGGUCCCcgggaccccaggCCCCCaCCCggcuuCCUCCCCg -3'
miRNA:   3'- -AUUAGGGa-----------GGGGG-GGGau---GGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 123160 0.68 0.425588
Target:  5'- -cGUCCCcagggccagCCCCUCCaagACCUCCCCa -3'
miRNA:   3'- auUAGGGa--------GGGGGGGga-UGGGGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.