miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 5' -64.4 NC_006146.1 + 373 0.68 0.434025
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCgCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 76999 0.67 0.459907
Target:  5'- ----gCCUCCgugcuggcCCCCCCUGCcgcaaauuccgCCCCCCUu -3'
miRNA:   3'- auuagGGAGG--------GGGGGGAUG-----------GGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 122891 0.68 0.451188
Target:  5'- -cGUgCCUCCCCCgCCaAgCCUCCCg -3'
miRNA:   3'- auUAgGGAGGGGGgGGaUgGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 127816 0.68 0.451188
Target:  5'- -uGUCCUgaaaaUCCgCCUCCaGCCUCCCCUg -3'
miRNA:   3'- auUAGGG-----AGGgGGGGGaUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 23924 0.68 0.437428
Target:  5'- uUGcgCCCagCCCCUCCUGCCCCaagggcggcgacuuuCCCc -3'
miRNA:   3'- -AUuaGGGagGGGGGGGAUGGGG---------------GGGa -5'
29004 5' -64.4 NC_006146.1 + 119070 0.68 0.434025
Target:  5'- ---cCCCgagCCCCCCUCcacGCCgCCCCg -3'
miRNA:   3'- auuaGGGa--GGGGGGGGa--UGGgGGGGa -5'
29004 5' -64.4 NC_006146.1 + 3168 0.68 0.434025
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 2236 0.68 0.434025
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 1304 0.68 0.434025
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 110780 0.67 0.459907
Target:  5'- aGGUCCCUCCCCcggCCCCUugCacagaaCgCCa -3'
miRNA:   3'- aUUAGGGAGGGG---GGGGAugGg-----GgGGa -5'
29004 5' -64.4 NC_006146.1 + 14372 0.67 0.468716
Target:  5'- gGGUCCCgggaucucgCCUCCCgCU-CCCCUCCg -3'
miRNA:   3'- aUUAGGGa--------GGGGGGgGAuGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 21315 0.67 0.495641
Target:  5'- ----gCCUCCUCUCCC-GCCgCCCCUu -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGgGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 44875 0.66 0.541974
Target:  5'- cAGUCCCUCCCggCCCagcagcagaagCCcACCgCCCCa -3'
miRNA:   3'- aUUAGGGAGGG--GGG-----------GGaUGGgGGGGa -5'
29004 5' -64.4 NC_006146.1 + 126883 0.66 0.541974
Target:  5'- ---gCCCUCggCCgCCCCCU-CCCCgCCg -3'
miRNA:   3'- auuaGGGAG--GG-GGGGGAuGGGGgGGa -5'
29004 5' -64.4 NC_006146.1 + 119320 0.66 0.53258
Target:  5'- ----gCCUCaguCCCCCCUucggccgcgccGCCUCCCCa -3'
miRNA:   3'- auuagGGAGg--GGGGGGA-----------UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 75581 0.66 0.53258
Target:  5'- aAAUCUCUCCCagaCCCuccgcgCCUACUgCCCCa -3'
miRNA:   3'- aUUAGGGAGGG---GGG------GGAUGGgGGGGa -5'
29004 5' -64.4 NC_006146.1 + 55934 0.66 0.513975
Target:  5'- --uUCCC-CgCCCUCUCUGCCUCCuCCa -3'
miRNA:   3'- auuAGGGaG-GGGGGGGAUGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 128350 0.67 0.504772
Target:  5'- gAAUUCagcgCCCCCCCa---CCCCCCg -3'
miRNA:   3'- aUUAGGga--GGGGGGGgaugGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 75939 0.67 0.504772
Target:  5'- uUAAUgCCUggcugcacaCCCCCCUCUACCgcagcggccacgUCCCCUg -3'
miRNA:   3'- -AUUAgGGA---------GGGGGGGGAUGG------------GGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 96178 0.67 0.495641
Target:  5'- gGGUCCCUCCagggCCUuucuggCCCUgagcguaaGCCCCCCUg -3'
miRNA:   3'- aUUAGGGAGG----GGG------GGGA--------UGGGGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.