Results 21 - 40 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29004 | 5' | -64.4 | NC_006146.1 | + | 373 | 0.68 | 0.434025 |
Target: 5'- cAAUCgCCgcgCCCCCUCagGCCCCgCCCg -3' miRNA: 3'- aUUAG-GGa--GGGGGGGgaUGGGG-GGGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 1304 | 0.68 | 0.434025 |
Target: 5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3' miRNA: 3'- aUUAG-GGa--GGGGGGGgaUGGGG-GGGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 96178 | 0.67 | 0.495641 |
Target: 5'- gGGUCCCUCCagggCCUuucuggCCCUgagcguaaGCCCCCCUg -3' miRNA: 3'- aUUAGGGAGG----GGG------GGGA--------UGGGGGGGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 75939 | 0.67 | 0.504772 |
Target: 5'- uUAAUgCCUggcugcacaCCCCCCUCUACCgcagcggccacgUCCCCUg -3' miRNA: 3'- -AUUAgGGA---------GGGGGGGGAUGG------------GGGGGA- -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 128350 | 0.67 | 0.504772 |
Target: 5'- gAAUUCagcgCCCCCCCa---CCCCCCg -3' miRNA: 3'- aUUAGGga--GGGGGGGgaugGGGGGGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 55934 | 0.66 | 0.513975 |
Target: 5'- --uUCCC-CgCCCUCUCUGCCUCCuCCa -3' miRNA: 3'- auuAGGGaG-GGGGGGGAUGGGGG-GGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 75581 | 0.66 | 0.53258 |
Target: 5'- aAAUCUCUCCCagaCCCuccgcgCCUACUgCCCCa -3' miRNA: 3'- aUUAGGGAGGG---GGG------GGAUGGgGGGGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 119320 | 0.66 | 0.53258 |
Target: 5'- ----gCCUCaguCCCCCCUucggccgcgccGCCUCCCCa -3' miRNA: 3'- auuagGGAGg--GGGGGGA-----------UGGGGGGGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 126883 | 0.66 | 0.541974 |
Target: 5'- ---gCCCUCggCCgCCCCCU-CCCCgCCg -3' miRNA: 3'- auuaGGGAG--GG-GGGGGAuGGGGgGGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 44875 | 0.66 | 0.541974 |
Target: 5'- cAGUCCCUCCCggCCCagcagcagaagCCcACCgCCCCa -3' miRNA: 3'- aUUAGGGAGGG--GGG-----------GGaUGGgGGGGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 21315 | 0.67 | 0.495641 |
Target: 5'- ----gCCUCCUCUCCC-GCCgCCCCUu -3' miRNA: 3'- auuagGGAGGGGGGGGaUGGgGGGGA- -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 14372 | 0.67 | 0.468716 |
Target: 5'- gGGUCCCgggaucucgCCUCCCgCU-CCCCUCCg -3' miRNA: 3'- aUUAGGGa--------GGGGGGgGAuGGGGGGGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 2236 | 0.68 | 0.434025 |
Target: 5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3' miRNA: 3'- aUUAG-GGa--GGGGGGGgaUGGGG-GGGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 3168 | 0.68 | 0.434025 |
Target: 5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3' miRNA: 3'- aUUAG-GGa--GGGGGGGgaUGGGG-GGGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 119070 | 0.68 | 0.434025 |
Target: 5'- ---cCCCgagCCCCCCUCcacGCCgCCCCg -3' miRNA: 3'- auuaGGGa--GGGGGGGGa--UGGgGGGGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 23924 | 0.68 | 0.437428 |
Target: 5'- uUGcgCCCagCCCCUCCUGCCCCaagggcggcgacuuuCCCc -3' miRNA: 3'- -AUuaGGGagGGGGGGGAUGGGG---------------GGGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 127816 | 0.68 | 0.451188 |
Target: 5'- -uGUCCUgaaaaUCCgCCUCCaGCCUCCCCUg -3' miRNA: 3'- auUAGGG-----AGGgGGGGGaUGGGGGGGA- -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 122891 | 0.68 | 0.451188 |
Target: 5'- -cGUgCCUCCCCCgCCaAgCCUCCCg -3' miRNA: 3'- auUAgGGAGGGGGgGGaUgGGGGGGa -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 76999 | 0.67 | 0.459907 |
Target: 5'- ----gCCUCCgugcuggcCCCCCCUGCcgcaaauuccgCCCCCCUu -3' miRNA: 3'- auuagGGAGG--------GGGGGGAUG-----------GGGGGGA- -5' |
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29004 | 5' | -64.4 | NC_006146.1 | + | 110780 | 0.67 | 0.459907 |
Target: 5'- aGGUCCCUCCCCcggCCCCUugCacagaaCgCCa -3' miRNA: 3'- aUUAGGGAGGGG---GGGGAugGg-----GgGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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