miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29004 5' -64.4 NC_006146.1 + 55934 0.66 0.513975
Target:  5'- --uUCCC-CgCCCUCUCUGCCUCCuCCa -3'
miRNA:   3'- auuAGGGaG-GGGGGGGAUGGGGG-GGa -5'
29004 5' -64.4 NC_006146.1 + 75581 0.66 0.53258
Target:  5'- aAAUCUCUCCCagaCCCuccgcgCCUACUgCCCCa -3'
miRNA:   3'- aUUAGGGAGGG---GGG------GGAUGGgGGGGa -5'
29004 5' -64.4 NC_006146.1 + 119320 0.66 0.53258
Target:  5'- ----gCCUCaguCCCCCCUucggccgcgccGCCUCCCCa -3'
miRNA:   3'- auuagGGAGg--GGGGGGA-----------UGGGGGGGa -5'
29004 5' -64.4 NC_006146.1 + 126883 0.66 0.541974
Target:  5'- ---gCCCUCggCCgCCCCCU-CCCCgCCg -3'
miRNA:   3'- auuaGGGAG--GG-GGGGGAuGGGGgGGa -5'
29004 5' -64.4 NC_006146.1 + 44875 0.66 0.541974
Target:  5'- cAGUCCCUCCCggCCCagcagcagaagCCcACCgCCCCa -3'
miRNA:   3'- aUUAGGGAGGG--GGG-----------GGaUGGgGGGGa -5'
29004 5' -64.4 NC_006146.1 + 127816 0.68 0.451188
Target:  5'- -uGUCCUgaaaaUCCgCCUCCaGCCUCCCCUg -3'
miRNA:   3'- auUAGGG-----AGGgGGGGGaUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 23924 0.68 0.437428
Target:  5'- uUGcgCCCagCCCCUCCUGCCCCaagggcggcgacuuuCCCc -3'
miRNA:   3'- -AUuaGGGagGGGGGGGAUGGGG---------------GGGa -5'
29004 5' -64.4 NC_006146.1 + 3940 0.69 0.392839
Target:  5'- -cGUCCUcuauUUCCCCUCCUcaugcagcagcACUCCCCCUg -3'
miRNA:   3'- auUAGGG----AGGGGGGGGA-----------UGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 62199 0.69 0.392839
Target:  5'- aAAUCCCaguuguuauUCCCaCCUCCUACCCCaguaUCUa -3'
miRNA:   3'- aUUAGGG---------AGGG-GGGGGAUGGGGg---GGA- -5'
29004 5' -64.4 NC_006146.1 + 51915 0.68 0.400872
Target:  5'- --cUUCCUCCCCCCa--GCUCCUCCUu -3'
miRNA:   3'- auuAGGGAGGGGGGggaUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 20170 0.68 0.400872
Target:  5'- aGAUCCCUCgCCUCUUUGCagagggCCCCCg -3'
miRNA:   3'- aUUAGGGAGgGGGGGGAUGg-----GGGGGa -5'
29004 5' -64.4 NC_006146.1 + 125549 0.68 0.425588
Target:  5'- ---aCCCUCCUCCCguuggguaCCgGCCuCCCCCg -3'
miRNA:   3'- auuaGGGAGGGGGG--------GGaUGG-GGGGGa -5'
29004 5' -64.4 NC_006146.1 + 119220 0.68 0.425588
Target:  5'- cGAUCagcCCCCgCCCCgucGCCCCCCUUc -3'
miRNA:   3'- aUUAGggaGGGG-GGGGa--UGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 42034 0.68 0.433177
Target:  5'- ----gCCUCCgCCCCCUcuucgugGCCCUUCCUg -3'
miRNA:   3'- auuagGGAGGgGGGGGA-------UGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 80815 0.68 0.434025
Target:  5'- --cUCCgCUgCCUCCaCUGCUCCCCCUg -3'
miRNA:   3'- auuAGG-GAgGGGGGgGAUGGGGGGGA- -5'
29004 5' -64.4 NC_006146.1 + 373 0.68 0.434025
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCgCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 1304 0.68 0.434025
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 2236 0.68 0.434025
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 3168 0.68 0.434025
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGG-GGGa -5'
29004 5' -64.4 NC_006146.1 + 119070 0.68 0.434025
Target:  5'- ---cCCCgagCCCCCCUCcacGCCgCCCCg -3'
miRNA:   3'- auuaGGGa--GGGGGGGGa--UGGgGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.