miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29006 3' -54.2 NC_006146.1 + 15311 0.66 0.96164
Target:  5'- --gGGCCgGAggcCAGCCCCGGug-UGCc -3'
miRNA:   3'- uaaUUGGaCUa--GUCGGGGCCccaACG- -5'
29006 3' -54.2 NC_006146.1 + 66703 0.66 0.96164
Target:  5'- --cGGCUUG--CGGCCCCguGGGGgcGCa -3'
miRNA:   3'- uaaUUGGACuaGUCGGGG--CCCCaaCG- -5'
29006 3' -54.2 NC_006146.1 + 138754 0.66 0.95837
Target:  5'- ---uGCCUGAgcccaucccccacccCAGCacCCCGGGGUgacgugGCa -3'
miRNA:   3'- uaauUGGACUa--------------GUCG--GGGCCCCAa-----CG- -5'
29006 3' -54.2 NC_006146.1 + 53479 0.66 0.957995
Target:  5'- ---uGCCUcGUCGGUCagggCCGGGGgUGCg -3'
miRNA:   3'- uaauUGGAcUAGUCGG----GGCCCCaACG- -5'
29006 3' -54.2 NC_006146.1 + 69708 0.66 0.957995
Target:  5'- --gGAUCU--UCAGCUCCGaGGGgcGCa -3'
miRNA:   3'- uaaUUGGAcuAGUCGGGGC-CCCaaCG- -5'
29006 3' -54.2 NC_006146.1 + 5391 0.66 0.957995
Target:  5'- --cAugCUGcgUGGCaUCCGGGGcUGCg -3'
miRNA:   3'- uaaUugGACuaGUCG-GGGCCCCaACG- -5'
29006 3' -54.2 NC_006146.1 + 144495 0.66 0.95412
Target:  5'- ----cCCUGGaCGGgCCUGGGGUgGCc -3'
miRNA:   3'- uaauuGGACUaGUCgGGGCCCCAaCG- -5'
29006 3' -54.2 NC_006146.1 + 141417 0.66 0.95412
Target:  5'- ----cCCUGGaCGGgCCUGGGGUgGCc -3'
miRNA:   3'- uaauuGGACUaGUCgGGGCCCCAaCG- -5'
29006 3' -54.2 NC_006146.1 + 128797 0.66 0.95412
Target:  5'- --aAGCgUGAUCGGCCaCacagggaGGGGcgGCg -3'
miRNA:   3'- uaaUUGgACUAGUCGG-Gg------CCCCaaCG- -5'
29006 3' -54.2 NC_006146.1 + 150651 0.66 0.95412
Target:  5'- ----cCCUGGaCGGgCCUGGGGUgGCc -3'
miRNA:   3'- uaauuGGACUaGUCgGGGCCCCAaCG- -5'
29006 3' -54.2 NC_006146.1 + 147573 0.66 0.95412
Target:  5'- ----cCCUGGaCGGgCCUGGGGUgGCc -3'
miRNA:   3'- uaauuGGACUaGUCgGGGCCCCAaCG- -5'
29006 3' -54.2 NC_006146.1 + 153728 0.66 0.95412
Target:  5'- ----cCCUGGaCGGgCCUGGGGUgGCc -3'
miRNA:   3'- uaauuGGACUaGUCgGGGCCCCAaCG- -5'
29006 3' -54.2 NC_006146.1 + 156806 0.66 0.95412
Target:  5'- ----cCCUGGaCGGgCCUGGGGUgGCc -3'
miRNA:   3'- uaauuGGACUaGUCgGGGCCCCAaCG- -5'
29006 3' -54.2 NC_006146.1 + 53359 0.66 0.95001
Target:  5'- --cAGCCUGAaugcggcccaGGCCCCGaGGGagagGCg -3'
miRNA:   3'- uaaUUGGACUag--------UCGGGGC-CCCaa--CG- -5'
29006 3' -54.2 NC_006146.1 + 106218 0.66 0.95001
Target:  5'- --gGGCCUGGU--GUCCUGGGGgaGUa -3'
miRNA:   3'- uaaUUGGACUAguCGGGGCCCCaaCG- -5'
29006 3' -54.2 NC_006146.1 + 85647 0.66 0.945662
Target:  5'- --gGGgCUGGUUGGCCCaCGGGGa--- -3'
miRNA:   3'- uaaUUgGACUAGUCGGG-GCCCCaacg -5'
29006 3' -54.2 NC_006146.1 + 55124 0.66 0.945662
Target:  5'- ---cACCUGcucguacUCGGCCuCCGGuGGggGCa -3'
miRNA:   3'- uaauUGGACu------AGUCGG-GGCC-CCaaCG- -5'
29006 3' -54.2 NC_006146.1 + 151324 0.66 0.945662
Target:  5'- -cUGGCCUGGga---CCCGGGGagGCa -3'
miRNA:   3'- uaAUUGGACUagucgGGGCCCCaaCG- -5'
29006 3' -54.2 NC_006146.1 + 154402 0.66 0.945662
Target:  5'- -cUGGCCUGGga---CCCGGGGagGCa -3'
miRNA:   3'- uaAUUGGACUagucgGGGCCCCaaCG- -5'
29006 3' -54.2 NC_006146.1 + 157480 0.66 0.945662
Target:  5'- -cUGGCCUGGga---CCCGGGGagGCa -3'
miRNA:   3'- uaAUUGGACUagucgGGGCCCCaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.