Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29006 | 3' | -54.2 | NC_006146.1 | + | 138754 | 0.66 | 0.95837 |
Target: 5'- ---uGCCUGAgcccaucccccacccCAGCacCCCGGGGUgacgugGCa -3' miRNA: 3'- uaauUGGACUa--------------GUCG--GGGCCCCAa-----CG- -5' |
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29006 | 3' | -54.2 | NC_006146.1 | + | 154402 | 0.66 | 0.945662 |
Target: 5'- -cUGGCCUGGga---CCCGGGGagGCa -3' miRNA: 3'- uaAUUGGACUagucgGGGCCCCaaCG- -5' |
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29006 | 3' | -54.2 | NC_006146.1 | + | 151324 | 0.66 | 0.945662 |
Target: 5'- -cUGGCCUGGga---CCCGGGGagGCa -3' miRNA: 3'- uaAUUGGACUagucgGGGCCCCaaCG- -5' |
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29006 | 3' | -54.2 | NC_006146.1 | + | 148246 | 0.66 | 0.945662 |
Target: 5'- -cUGGCCUGGga---CCCGGGGagGCa -3' miRNA: 3'- uaAUUGGACUagucgGGGCCCCaaCG- -5' |
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29006 | 3' | -54.2 | NC_006146.1 | + | 145168 | 0.66 | 0.945662 |
Target: 5'- -cUGGCCUGGga---CCCGGGGagGCa -3' miRNA: 3'- uaAUUGGACUagucgGGGCCCCaaCG- -5' |
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29006 | 3' | -54.2 | NC_006146.1 | + | 142090 | 0.66 | 0.945662 |
Target: 5'- -cUGGCCUGGga---CCCGGGGagGCa -3' miRNA: 3'- uaAUUGGACUagucgGGGCCCCaaCG- -5' |
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29006 | 3' | -54.2 | NC_006146.1 | + | 44353 | 0.66 | 0.941073 |
Target: 5'- -gUGACCgcg--GGCCCCGGGG--GCa -3' miRNA: 3'- uaAUUGGacuagUCGGGGCCCCaaCG- -5' |
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29006 | 3' | -54.2 | NC_006146.1 | + | 158451 | 0.66 | 0.941073 |
Target: 5'- --gGGCCUGAaaGGCCCCGGcGccugGCu -3' miRNA: 3'- uaaUUGGACUagUCGGGGCC-Ccaa-CG- -5' |
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29006 | 3' | -54.2 | NC_006146.1 | + | 155372 | 0.66 | 0.941073 |
Target: 5'- --gGGCCUGAaaGGCCCCGGcGccugGCu -3' miRNA: 3'- uaaUUGGACUagUCGGGGCC-Ccaa-CG- -5' |
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29006 | 3' | -54.2 | NC_006146.1 | + | 157480 | 0.66 | 0.945662 |
Target: 5'- -cUGGCCUGGga---CCCGGGGagGCa -3' miRNA: 3'- uaAUUGGACUagucgGGGCCCCaaCG- -5' |
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29006 | 3' | -54.2 | NC_006146.1 | + | 143707 | 0.66 | 0.945662 |
Target: 5'- aGUUAGCCUGG--GGCCUCGGaGGgccuggaggGCu -3' miRNA: 3'- -UAAUUGGACUagUCGGGGCC-CCaa-------CG- -5' |
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29006 | 3' | -54.2 | NC_006146.1 | + | 53359 | 0.66 | 0.95001 |
Target: 5'- --cAGCCUGAaugcggcccaGGCCCCGaGGGagagGCg -3' miRNA: 3'- uaaUUGGACUag--------UCGGGGC-CCCaa--CG- -5' |
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29006 | 3' | -54.2 | NC_006146.1 | + | 15311 | 0.66 | 0.96164 |
Target: 5'- --gGGCCgGAggcCAGCCCCGGug-UGCc -3' miRNA: 3'- uaaUUGGaCUa--GUCGGGGCCccaACG- -5' |
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29006 | 3' | -54.2 | NC_006146.1 | + | 156806 | 0.66 | 0.95412 |
Target: 5'- ----cCCUGGaCGGgCCUGGGGUgGCc -3' miRNA: 3'- uaauuGGACUaGUCgGGGCCCCAaCG- -5' |
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29006 | 3' | -54.2 | NC_006146.1 | + | 153728 | 0.66 | 0.95412 |
Target: 5'- ----cCCUGGaCGGgCCUGGGGUgGCc -3' miRNA: 3'- uaauuGGACUaGUCgGGGCCCCAaCG- -5' |
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29006 | 3' | -54.2 | NC_006146.1 | + | 147573 | 0.66 | 0.95412 |
Target: 5'- ----cCCUGGaCGGgCCUGGGGUgGCc -3' miRNA: 3'- uaauuGGACUaGUCgGGGCCCCAaCG- -5' |
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29006 | 3' | -54.2 | NC_006146.1 | + | 150651 | 0.66 | 0.95412 |
Target: 5'- ----cCCUGGaCGGgCCUGGGGUgGCc -3' miRNA: 3'- uaauuGGACUaGUCgGGGCCCCAaCG- -5' |
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29006 | 3' | -54.2 | NC_006146.1 | + | 144495 | 0.66 | 0.95412 |
Target: 5'- ----cCCUGGaCGGgCCUGGGGUgGCc -3' miRNA: 3'- uaauuGGACUaGUCgGGGCCCCAaCG- -5' |
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29006 | 3' | -54.2 | NC_006146.1 | + | 141417 | 0.66 | 0.95412 |
Target: 5'- ----cCCUGGaCGGgCCUGGGGUgGCc -3' miRNA: 3'- uaauuGGACUaGUCgGGGCCCCAaCG- -5' |
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29006 | 3' | -54.2 | NC_006146.1 | + | 128797 | 0.66 | 0.95412 |
Target: 5'- --aAGCgUGAUCGGCCaCacagggaGGGGcgGCg -3' miRNA: 3'- uaaUUGgACUAGUCGG-Gg------CCCCaaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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