miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29006 5' -54.4 NC_006146.1 + 72970 0.66 0.95412
Target:  5'- uGCAUgAGgUCaCGGGCCUccGAGGGGGc- -3'
miRNA:   3'- -CGUGaUUgAG-GCCCGGA--CUUCUCCaa -5'
29006 5' -54.4 NC_006146.1 + 18840 0.66 0.95412
Target:  5'- aGUGCUuccaGACcCCGGGCgCUGccGGGGUg -3'
miRNA:   3'- -CGUGA----UUGaGGCCCG-GACuuCUCCAa -5'
29006 5' -54.4 NC_006146.1 + 146834 0.66 0.95001
Target:  5'- cGCGCcAGCguagagcCCGGGCCUGGcucGGGGc- -3'
miRNA:   3'- -CGUGaUUGa------GGCCCGGACUu--CUCCaa -5'
29006 5' -54.4 NC_006146.1 + 56746 0.66 0.95001
Target:  5'- cGCGCggGACgUCCgGGGCCUGAucgcGGAGc-- -3'
miRNA:   3'- -CGUGa-UUG-AGG-CCCGGACU----UCUCcaa -5'
29006 5' -54.4 NC_006146.1 + 141907 0.66 0.95001
Target:  5'- -gGCgu-CUCUGGGUCUGGacuGGAGGg- -3'
miRNA:   3'- cgUGauuGAGGCCCGGACU---UCUCCaa -5'
29006 5' -54.4 NC_006146.1 + 144985 0.66 0.95001
Target:  5'- -gGCgu-CUCUGGGUCUGGacuGGAGGg- -3'
miRNA:   3'- cgUGauuGAGGCCCGGACU---UCUCCaa -5'
29006 5' -54.4 NC_006146.1 + 148063 0.66 0.95001
Target:  5'- -gGCgu-CUCUGGGUCUGGacuGGAGGg- -3'
miRNA:   3'- cgUGauuGAGGCCCGGACU---UCUCCaa -5'
29006 5' -54.4 NC_006146.1 + 151141 0.66 0.95001
Target:  5'- -gGCgu-CUCUGGGUCUGGacuGGAGGg- -3'
miRNA:   3'- cgUGauuGAGGCCCGGACU---UCUCCaa -5'
29006 5' -54.4 NC_006146.1 + 154219 0.66 0.95001
Target:  5'- -gGCgu-CUCUGGGUCUGGacuGGAGGg- -3'
miRNA:   3'- cgUGauuGAGGCCCGGACU---UCUCCaa -5'
29006 5' -54.4 NC_006146.1 + 157297 0.66 0.95001
Target:  5'- -gGCgu-CUCUGGGUCUGGacuGGAGGg- -3'
miRNA:   3'- cgUGauuGAGGCCCGGACU---UCUCCaa -5'
29006 5' -54.4 NC_006146.1 + 102368 0.66 0.945662
Target:  5'- gGCACUcaaagguCUCCGGGuCCUcGggGAgcuGGUg -3'
miRNA:   3'- -CGUGAuu-----GAGGCCC-GGA-CuuCU---CCAa -5'
29006 5' -54.4 NC_006146.1 + 41858 0.66 0.945662
Target:  5'- cCAggGGCUaCCgGGGCCucgUGAAGAGGUUu -3'
miRNA:   3'- cGUgaUUGA-GG-CCCGG---ACUUCUCCAA- -5'
29006 5' -54.4 NC_006146.1 + 168137 0.66 0.941073
Target:  5'- --cCUGACaUCCGGGCUUGGGccugcGAGGg- -3'
miRNA:   3'- cguGAUUG-AGGCCCGGACUU-----CUCCaa -5'
29006 5' -54.4 NC_006146.1 + 143185 0.67 0.931162
Target:  5'- gGCGagggGACUgaggCGGGCCUGAAGcccGGGUUg -3'
miRNA:   3'- -CGUga--UUGAg---GCCCGGACUUC---UCCAA- -5'
29006 5' -54.4 NC_006146.1 + 146263 0.67 0.931162
Target:  5'- gGCGagggGACUgaggCGGGCCUGAAGcccGGGUUg -3'
miRNA:   3'- -CGUga--UUGAg---GCCCGGACUUC---UCCAA- -5'
29006 5' -54.4 NC_006146.1 + 149341 0.67 0.931162
Target:  5'- gGCGagggGACUgaggCGGGCCUGAAGcccGGGUUg -3'
miRNA:   3'- -CGUga--UUGAg---GCCCGGACUUC---UCCAA- -5'
29006 5' -54.4 NC_006146.1 + 152419 0.67 0.931162
Target:  5'- gGCGagggGACUgaggCGGGCCUGAAGcccGGGUUg -3'
miRNA:   3'- -CGUga--UUGAg---GCCCGGACUUC---UCCAA- -5'
29006 5' -54.4 NC_006146.1 + 155497 0.67 0.931162
Target:  5'- gGCGagggGACUgaggCGGGCCUGAAGcccGGGUUg -3'
miRNA:   3'- -CGUga--UUGAg---GCCCGGACUUC---UCCAA- -5'
29006 5' -54.4 NC_006146.1 + 158576 0.67 0.931162
Target:  5'- gGCGagggGACUgaggCGGGCCUGAAGcccGGGUUg -3'
miRNA:   3'- -CGUga--UUGAg---GCCCGGACUUC---UCCAA- -5'
29006 5' -54.4 NC_006146.1 + 117594 0.67 0.931162
Target:  5'- cGgGCUcgGACUCC-GGCCagGGAGAGGa- -3'
miRNA:   3'- -CgUGA--UUGAGGcCCGGa-CUUCUCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.